miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17509 3' -50 NC_004456.1 + 36767 0.66 0.933613
Target:  5'- gUCUGGCggUGCauuugGGAUAugAagaaacagGCCUGGc -3'
miRNA:   3'- -GGACUGuuGCGa----CCUAUugU--------UGGGCC- -5'
17509 3' -50 NC_004456.1 + 36325 0.66 0.927857
Target:  5'- cCC--GCAA-GCUGGAUuuUAGCCUGGa -3'
miRNA:   3'- -GGacUGUUgCGACCUAuuGUUGGGCC- -5'
17509 3' -50 NC_004456.1 + 7549 0.67 0.908795
Target:  5'- uUCUGGCAAuCGCUGGGguaaugGACAuuccucuCCCu- -3'
miRNA:   3'- -GGACUGUU-GCGACCUa-----UUGUu------GGGcc -5'
17509 3' -50 NC_004456.1 + 38728 0.67 0.894608
Target:  5'- gCCUGG--GCGCUGGAaaUGAUGACCa-- -3'
miRNA:   3'- -GGACUguUGCGACCU--AUUGUUGGgcc -5'
17509 3' -50 NC_004456.1 + 16133 0.67 0.887082
Target:  5'- aCCUGACGAUcagucaGUgGGGUGAUAAaaacuauguccuCCCGGa -3'
miRNA:   3'- -GGACUGUUG------CGaCCUAUUGUU------------GGGCC- -5'
17509 3' -50 NC_004456.1 + 40299 0.68 0.871189
Target:  5'- cCCUGAU--UGC-GGA-AGCAGCCUGGu -3'
miRNA:   3'- -GGACUGuuGCGaCCUaUUGUUGGGCC- -5'
17509 3' -50 NC_004456.1 + 17060 0.69 0.826911
Target:  5'- gCUGGCGAaGUauugGGAggaaguaaagGACGACCCGGa -3'
miRNA:   3'- gGACUGUUgCGa---CCUa---------UUGUUGGGCC- -5'
17509 3' -50 NC_004456.1 + 19469 0.7 0.755968
Target:  5'- aCCUGGCAGaC-CUGGGUGAUGugCgGGc -3'
miRNA:   3'- -GGACUGUU-GcGACCUAUUGUugGgCC- -5'
17509 3' -50 NC_004456.1 + 383 0.7 0.745184
Target:  5'- aCCUGAC-AC-CUGGGUccACAACCCa- -3'
miRNA:   3'- -GGACUGuUGcGACCUAu-UGUUGGGcc -5'
17509 3' -50 NC_004456.1 + 26234 0.72 0.655532
Target:  5'- gCUGAUAACcgaagccauGCUGGA--GCAggucACCCGGg -3'
miRNA:   3'- gGACUGUUG---------CGACCUauUGU----UGGGCC- -5'
17509 3' -50 NC_004456.1 + 31423 0.72 0.655532
Target:  5'- gCCggugGugAGUGCUGGGUG--GACCCGGa -3'
miRNA:   3'- -GGa---CugUUGCGACCUAUugUUGGGCC- -5'
17509 3' -50 NC_004456.1 + 29120 0.73 0.598322
Target:  5'- ---cGCAACGCUGGuuuucuucAACAACCUGGa -3'
miRNA:   3'- ggacUGUUGCGACCua------UUGUUGGGCC- -5'
17509 3' -50 NC_004456.1 + 39540 0.9 0.060754
Target:  5'- aCCUGuuAugGCgGGAUGACAGCCCGGa -3'
miRNA:   3'- -GGACugUugCGaCCUAUUGUUGGGCC- -5'
17509 3' -50 NC_004456.1 + 27918 1.14 0.001403
Target:  5'- uCCUGACAACGCUGGAUAACAACCCGGg -3'
miRNA:   3'- -GGACUGUUGCGACCUAUUGUUGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.