miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17512 3' -57.8 NC_004456.1 + 40237 0.66 0.452035
Target:  5'- aGGCUGCuuCCGCaaucaGGGCAGCcGCaCUGc -3'
miRNA:   3'- aCUGAUGc-GGCGg----UCCGUCGuUG-GAC- -5'
17512 3' -57.8 NC_004456.1 + 39059 0.67 0.43228
Target:  5'- uUGAUgUAUGCCuCUuugauGGCGGCGGCCUGc -3'
miRNA:   3'- -ACUG-AUGCGGcGGu----CCGUCGUUGGAC- -5'
17512 3' -57.8 NC_004456.1 + 35601 0.67 0.394332
Target:  5'- gGugUGauUGCUGCCAGuGCcGCAGCCa- -3'
miRNA:   3'- aCugAU--GCGGCGGUC-CGuCGUUGGac -5'
17512 3' -57.8 NC_004456.1 + 41399 0.68 0.366446
Target:  5'- aGcAUUGC-CCGCCAGGCAacaaaaaccaucaGCAACCa- -3'
miRNA:   3'- aC-UGAUGcGGCGGUCCGU-------------CGUUGGac -5'
17512 3' -57.8 NC_004456.1 + 23713 0.68 0.358609
Target:  5'- cUGGCgUAUGCC-CCGGGCGGUGAUgUGc -3'
miRNA:   3'- -ACUG-AUGCGGcGGUCCGUCGUUGgAC- -5'
17512 3' -57.8 NC_004456.1 + 35690 0.68 0.357745
Target:  5'- cGGCUcCGCUGCCGcuggcauGGCuGCGGCaCUGg -3'
miRNA:   3'- aCUGAuGCGGCGGU-------CCGuCGUUG-GAC- -5'
17512 3' -57.8 NC_004456.1 + 23480 0.69 0.317233
Target:  5'- cGGC-AgGCUGCCGGGUAGCggUCa- -3'
miRNA:   3'- aCUGaUgCGGCGGUCCGUCGuuGGac -5'
17512 3' -57.8 NC_004456.1 + 33247 0.69 0.294184
Target:  5'- aGGCUGuucaGCCGCCuucaucuccuGGGCAGCucggccACCUGc -3'
miRNA:   3'- aCUGAUg---CGGCGG----------UCCGUCGu-----UGGAC- -5'
17512 3' -57.8 NC_004456.1 + 30645 0.7 0.272461
Target:  5'- -aGCUugGCCGCUucucGGCGGCuACCg- -3'
miRNA:   3'- acUGAugCGGCGGu---CCGUCGuUGGac -5'
17512 3' -57.8 NC_004456.1 + 16457 0.72 0.203735
Target:  5'- aUGACacccUGCUGaaaaaaguuuauCCAGGCGGCAGCCUGa -3'
miRNA:   3'- -ACUGau--GCGGC------------GGUCCGUCGUUGGAC- -5'
17512 3' -57.8 NC_004456.1 + 21199 0.74 0.154815
Target:  5'- -cACUACGCCGaCCGcuuucuucucGGCAGCAgugccGCCUGg -3'
miRNA:   3'- acUGAUGCGGC-GGU----------CCGUCGU-----UGGAC- -5'
17512 3' -57.8 NC_004456.1 + 32187 1.07 0.000467
Target:  5'- cUGACUACGCCGCCAGGCAGCAACCUGc -3'
miRNA:   3'- -ACUGAUGCGGCGGUCCGUCGUUGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.