miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17513 3' -53.8 NC_004456.1 + 12137 0.66 0.682338
Target:  5'- gGUUGGcAGAGGCUgaaaugGCgGGCAAGCGGGc -3'
miRNA:   3'- -CGACU-UUUCUGGg-----CGgUCGUUCGCCU- -5'
17513 3' -53.8 NC_004456.1 + 32285 0.67 0.648331
Target:  5'- aGCUGGcuuaccaauGAAGccACCgGCCAGCAgguugcugccuGGCGGc -3'
miRNA:   3'- -CGACU---------UUUC--UGGgCGGUCGU-----------UCGCCu -5'
17513 3' -53.8 NC_004456.1 + 25054 0.67 0.62556
Target:  5'- aGCUGGAGucuGACCCGUUGGCugGAGCc-- -3'
miRNA:   3'- -CGACUUUu--CUGGGCGGUCG--UUCGccu -5'
17513 3' -53.8 NC_004456.1 + 32988 0.67 0.62556
Target:  5'- cCUGAccaGAAGcuCCCGCCAcGUucuuGAGCGGGg -3'
miRNA:   3'- cGACU---UUUCu-GGGCGGU-CG----UUCGCCU- -5'
17513 3' -53.8 NC_004456.1 + 13723 0.68 0.602814
Target:  5'- uGUUGAAAuGAacaacacaacaaCCCGCCAcUAGGCGGGu -3'
miRNA:   3'- -CGACUUUuCU------------GGGCGGUcGUUCGCCU- -5'
17513 3' -53.8 NC_004456.1 + 19438 0.68 0.567797
Target:  5'- cGCUGGGAagaaguGGACCCGCUcaagaaacaccuGGCAGaccugggugauguGCGGGc -3'
miRNA:   3'- -CGACUUU------UCUGGGCGG------------UCGUU-------------CGCCU- -5'
17513 3' -53.8 NC_004456.1 + 35609 0.69 0.546583
Target:  5'- uGCUGcc-AGugCCgcagccauGCCAGCGgcAGCGGAg -3'
miRNA:   3'- -CGACuuuUCugGG--------CGGUCGU--UCGCCU- -5'
17513 3' -53.8 NC_004456.1 + 8420 0.71 0.430318
Target:  5'- uGCgGGuaguGACCCGCCcGCAaccgagAGCGGAu -3'
miRNA:   3'- -CGaCUuuu-CUGGGCGGuCGU------UCGCCU- -5'
17513 3' -53.8 NC_004456.1 + 21305 0.75 0.24781
Target:  5'- ----uAAAG-CCCGCCAGUGAGCGGGu -3'
miRNA:   3'- cgacuUUUCuGGGCGGUCGUUCGCCU- -5'
17513 3' -53.8 NC_004456.1 + 5764 0.8 0.112803
Target:  5'- aGCUGAggcaAAAG-CUCGCCAGgAAGCGGAa -3'
miRNA:   3'- -CGACU----UUUCuGGGCGGUCgUUCGCCU- -5'
17513 3' -53.8 NC_004456.1 + 14013 0.81 0.091872
Target:  5'- uGCuUGAAAuGAUCCGCCAGCAcuauGCGGAg -3'
miRNA:   3'- -CG-ACUUUuCUGGGCGGUCGUu---CGCCU- -5'
17513 3' -53.8 NC_004456.1 + 35477 1.11 0.00066
Target:  5'- gGCUGAAAAGACCCGCCAGCAAGCGGAg -3'
miRNA:   3'- -CGACUUUUCUGGGCGGUCGUUCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.