miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1758 3' -57.2 NC_001347.2 + 26466 0.66 0.932832
Target:  5'- uGCGCuGUAUGuggcgcuucucucGUUCACCACCGCCGg -3'
miRNA:   3'- -CGUGuCGUGCua-----------CGGGUGGUGGUGGU- -5'
1758 3' -57.2 NC_001347.2 + 8862 0.66 0.930854
Target:  5'- aGCACAuccaaACG-UGagCCACCACCACCc -3'
miRNA:   3'- -CGUGUcg---UGCuACg-GGUGGUGGUGGu -5'
1758 3' -57.2 NC_001347.2 + 1588 0.66 0.930854
Target:  5'- gGCACGGCGCGGgcgagguggUGCggCugUACCGCUg -3'
miRNA:   3'- -CGUGUCGUGCU---------ACGg-GugGUGGUGGu -5'
1758 3' -57.2 NC_001347.2 + 68036 0.66 0.930854
Target:  5'- uGCugAcCGCcgcuCCCGCCGCCGCCAc -3'
miRNA:   3'- -CGugUcGUGcuacGGGUGGUGGUGGU- -5'
1758 3' -57.2 NC_001347.2 + 114697 0.66 0.930854
Target:  5'- gGCAcCGGCAaGAUGCgCAUUACCcCCGa -3'
miRNA:   3'- -CGU-GUCGUgCUACGgGUGGUGGuGGU- -5'
1758 3' -57.2 NC_001347.2 + 100188 0.66 0.930854
Target:  5'- uGCGCGGCGcCGcgGCCuCGCC-CagguaGCCGg -3'
miRNA:   3'- -CGUGUCGU-GCuaCGG-GUGGuGg----UGGU- -5'
1758 3' -57.2 NC_001347.2 + 63001 0.66 0.930854
Target:  5'- cGCugAGaGCGc-GCCCGCCACUGCgGa -3'
miRNA:   3'- -CGugUCgUGCuaCGGGUGGUGGUGgU- -5'
1758 3' -57.2 NC_001347.2 + 66704 0.66 0.925751
Target:  5'- -uGCAGCcUGccGCcggcuguuucuaCCACCGCCACCAc -3'
miRNA:   3'- cgUGUCGuGCuaCG------------GGUGGUGGUGGU- -5'
1758 3' -57.2 NC_001347.2 + 38428 0.66 0.925751
Target:  5'- -gGCGGCgACGucGUCC-CCGCCGCCGu -3'
miRNA:   3'- cgUGUCG-UGCuaCGGGuGGUGGUGGU- -5'
1758 3' -57.2 NC_001347.2 + 74845 0.66 0.925751
Target:  5'- aGCACcGcCGCGAaagGCCgcgCugCACCACCu -3'
miRNA:   3'- -CGUGuC-GUGCUa--CGG---GugGUGGUGGu -5'
1758 3' -57.2 NC_001347.2 + 112690 0.66 0.925751
Target:  5'- -gACGGCGCGGgcucguaacGCCgACC-CCACCc -3'
miRNA:   3'- cgUGUCGUGCUa--------CGGgUGGuGGUGGu -5'
1758 3' -57.2 NC_001347.2 + 68227 0.66 0.925751
Target:  5'- -aGCGGUagacGCGgcGCCgcaACCACCGCCu -3'
miRNA:   3'- cgUGUCG----UGCuaCGGg--UGGUGGUGGu -5'
1758 3' -57.2 NC_001347.2 + 163623 0.66 0.925751
Target:  5'- aGCGCcgAGcCGCGGcUGCCCGggUCGCgCACCAg -3'
miRNA:   3'- -CGUG--UC-GUGCU-ACGGGU--GGUG-GUGGU- -5'
1758 3' -57.2 NC_001347.2 + 175417 0.66 0.922582
Target:  5'- cCAUGGguCuGUGCCCgacgacgguuuccacGCCACCGCCGc -3'
miRNA:   3'- cGUGUCguGcUACGGG---------------UGGUGGUGGU- -5'
1758 3' -57.2 NC_001347.2 + 109295 0.66 0.920424
Target:  5'- aGUACAGCGagcacCCCACCuuCACCAg -3'
miRNA:   3'- -CGUGUCGUgcuacGGGUGGugGUGGU- -5'
1758 3' -57.2 NC_001347.2 + 85344 0.66 0.920424
Target:  5'- cGC-CAGCGCcGUcGCCCGCgGCUagGCCGa -3'
miRNA:   3'- -CGuGUCGUGcUA-CGGGUGgUGG--UGGU- -5'
1758 3' -57.2 NC_001347.2 + 18822 0.66 0.920424
Target:  5'- gGCACGGCGCacuggGCaCCAUCACaCGCUc -3'
miRNA:   3'- -CGUGUCGUGcua--CG-GGUGGUG-GUGGu -5'
1758 3' -57.2 NC_001347.2 + 193883 0.66 0.920424
Target:  5'- uGUACAcGCGCGA-GCCCGUCauGCCGCUg -3'
miRNA:   3'- -CGUGU-CGUGCUaCGGGUGG--UGGUGGu -5'
1758 3' -57.2 NC_001347.2 + 192196 0.66 0.914871
Target:  5'- cCGCGGCGCGG-GCUCGgCGucCCGCCGu -3'
miRNA:   3'- cGUGUCGUGCUaCGGGUgGU--GGUGGU- -5'
1758 3' -57.2 NC_001347.2 + 189097 0.66 0.914871
Target:  5'- cCACGGCuucucaaaacACcGUGUCCACCACC-CCu -3'
miRNA:   3'- cGUGUCG----------UGcUACGGGUGGUGGuGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.