miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17589 3' -58.8 NC_004466.2 + 1087 0.66 0.497374
Target:  5'- uGGggUAUCCCCCgguuaUAGGcccuggaucaaAGgcaaCCCCCGa -3'
miRNA:   3'- cCCuuAUAGGGGG-----GUCC-----------UCa---GGGGGU- -5'
17589 3' -58.8 NC_004466.2 + 33780 0.66 0.477144
Target:  5'- aGGGGAUAUCCgcgUUCCAauggucugcaacGGGGUCCCauCCAc -3'
miRNA:   3'- -CCCUUAUAGG---GGGGU------------CCUCAGGG--GGU- -5'
17589 3' -58.8 NC_004466.2 + 25415 0.67 0.428458
Target:  5'- cGGGggUAUgCCCUuuGGGcugCCCCUAc -3'
miRNA:   3'- -CCCuuAUA-GGGGggUCCucaGGGGGU- -5'
17589 3' -58.8 NC_004466.2 + 40843 0.67 0.419076
Target:  5'- uGGGGcUGaaCCCCUcGGAGUCCCUg- -3'
miRNA:   3'- -CCCUuAUagGGGGGuCCUCAGGGGgu -5'
17589 3' -58.8 NC_004466.2 + 38878 0.68 0.365505
Target:  5'- aGGAGUAa-CCCCCAGGAugaaGUCCCaggugCCAu -3'
miRNA:   3'- cCCUUAUagGGGGGUCCU----CAGGG-----GGU- -5'
17589 3' -58.8 NC_004466.2 + 35597 0.69 0.332509
Target:  5'- cGGGAcGUGUUCCaCCUGGGAcUCCCuCCGg -3'
miRNA:   3'- -CCCU-UAUAGGG-GGGUCCUcAGGG-GGU- -5'
17589 3' -58.8 NC_004466.2 + 21636 0.7 0.292242
Target:  5'- cGGAAUAcuUCCUCCCAucuagccauuGGAGUagucgauggguuuaCCCCCAa -3'
miRNA:   3'- cCCUUAU--AGGGGGGU----------CCUCA--------------GGGGGU- -5'
17589 3' -58.8 NC_004466.2 + 32131 0.7 0.266456
Target:  5'- uGGGGA-AUCCCCCgCAGGAGUacauacggCCUCGc -3'
miRNA:   3'- -CCCUUaUAGGGGG-GUCCUCAg-------GGGGU- -5'
17589 3' -58.8 NC_004466.2 + 41627 0.7 0.266456
Target:  5'- aGGGAGgccaugAUCCaauCCgGGGAGgcuugCCCCCAu -3'
miRNA:   3'- -CCCUUa-----UAGGg--GGgUCCUCa----GGGGGU- -5'
17589 3' -58.8 NC_004466.2 + 41719 0.71 0.253301
Target:  5'- aGGAAgg--CCCCCAGGAG-CCCCg- -3'
miRNA:   3'- cCCUUauagGGGGGUCCUCaGGGGgu -5'
17589 3' -58.8 NC_004466.2 + 666 0.71 0.253301
Target:  5'- gGGGuuUGUCaagCCCCuGGGGuuUCCCCCGu -3'
miRNA:   3'- -CCCuuAUAGg--GGGGuCCUC--AGGGGGU- -5'
17589 3' -58.8 NC_004466.2 + 1069 0.74 0.153499
Target:  5'- uGGGggUGgccuaUCCCCAGGGGUauagCCCCUAg -3'
miRNA:   3'- -CCCuuAUag---GGGGGUCCUCA----GGGGGU- -5'
17589 3' -58.8 NC_004466.2 + 1103 1.1 0.000309
Target:  5'- gGGGAAUAUCCCCCCAGGAGUCCCCCAg -3'
miRNA:   3'- -CCCUUAUAGGGGGGUCCUCAGGGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.