miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
17591	3'	-53.7	NC_004466.2	+	31063	0.66	0.755572
	Target:  5'- -uGAGGACGAGCUUUCGGcUAUGUcgauuGCu -3' miRNA:   3'- uuCUCCUGUUUGGGGGCCuAUGCA-----CG- -5'
17591	3'	-53.7	NC_004466.2	+	945	0.66	0.722116
	Target:  5'- cAAGGGGuu-GACCCCCGGAcuagccuUAUG-GUa -3' miRNA:   3'- -UUCUCCuguUUGGGGGCCU-------AUGCaCG- -5'
17591	3'	-53.7	NC_004466.2	+	16961	0.67	0.701138
	Target:  5'- -cGAGGGaguAACCCCUGGAcUGCuguccuaggugGUGCu -3' miRNA:   3'- uuCUCCUgu-UUGGGGGCCU-AUG-----------CACG- -5'
17591	3'	-53.7	NC_004466.2	+	34531	0.67	0.689988
	Target:  5'- -cGAGGAUGGAUgcucaaauccuUCCUGGA-ACGUGCa -3' miRNA:   3'- uuCUCCUGUUUG-----------GGGGCCUaUGCACG- -5'
17591	3'	-53.7	NC_004466.2	+	38873	0.67	0.656233
	Target:  5'- uAAGuAGGAguAACCCCCaGGAUGaagucccagGUGCc -3' miRNA:   3'- -UUC-UCCUguUUGGGGG-CCUAUg--------CACG- -5'
17591	3'	-53.7	NC_004466.2	+	38672	0.68	0.595133
	Target:  5'- uGAGGGGguaucaacucgauACGcuCCCCCgcguucuucacggaGGGUACGUGCu -3' miRNA:   3'- -UUCUCC-------------UGUuuGGGGG--------------CCUAUGCACG- -5'
17591	3'	-53.7	NC_004466.2	+	776	0.69	0.570427
	Target:  5'- --aAGGacuaucagucccccaGCAAACCCCCGGAUAUGa-- -3' miRNA:   3'- uucUCC---------------UGUUUGGGGGCCUAUGCacg -5'
17591	3'	-53.7	NC_004466.2	+	25498	0.72	0.380875
	Target:  5'- gAAGAGGACAAGCCUgaGGAcguauUugGUGa -3' miRNA:   3'- -UUCUCCUGUUUGGGggCCU-----AugCACg -5'
17591	3'	-53.7	NC_004466.2	+	41546	0.74	0.296977
	Target:  5'- -uGGGGGCAAGCcuCCCCGGAUugGa-- -3' miRNA:   3'- uuCUCCUGUUUG--GGGGCCUAugCacg -5'
17591	3'	-53.7	NC_004466.2	+	3363	1.09	0.001146
	Target:  5'- aAAGAGGACAAACCCCCGGAUACGUGCc -3' miRNA:   3'- -UUCUCCUGUUUGGGGGCCUAUGCACG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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