miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17592 3' -51.4 NC_004466.2 + 23427 0.66 0.867459
Target:  5'- --cGGGAGguguCCCUCAGgaaCCUCAcaagacUCCc -3'
miRNA:   3'- guaUCCUUau--GGGAGUCg--GGAGU------AGG- -5'
17592 3' -51.4 NC_004466.2 + 31336 0.66 0.858951
Target:  5'- ----aGAAUACCCcuucaaGGCCCUCGacUCCc -3'
miRNA:   3'- guaucCUUAUGGGag----UCGGGAGU--AGG- -5'
17592 3' -51.4 NC_004466.2 + 1905 0.66 0.850184
Target:  5'- --aAGGAAUugaaCCUCuAGCCUaaggCGUCCg -3'
miRNA:   3'- guaUCCUUAug--GGAG-UCGGGa---GUAGG- -5'
17592 3' -51.4 NC_004466.2 + 42942 0.66 0.83191
Target:  5'- gAUAGGGAggaUACCUUUgauGCCUaCGUCCu -3'
miRNA:   3'- gUAUCCUU---AUGGGAGu--CGGGaGUAGG- -5'
17592 3' -51.4 NC_004466.2 + 8953 0.66 0.828142
Target:  5'- gAUAGGAccACCUUCAGCCaugggacgauUCCg -3'
miRNA:   3'- gUAUCCUuaUGGGAGUCGGgagu------AGG- -5'
17592 3' -51.4 NC_004466.2 + 21728 0.67 0.821463
Target:  5'- --cGGGcuuUACCCUCAGCagcacccCCUC-UCCc -3'
miRNA:   3'- guaUCCuu-AUGGGAGUCG-------GGAGuAGG- -5'
17592 3' -51.4 NC_004466.2 + 13904 0.67 0.812719
Target:  5'- gGUAGcAAUACCCUCGGCUa-CAcCCg -3'
miRNA:   3'- gUAUCcUUAUGGGAGUCGGgaGUaGG- -5'
17592 3' -51.4 NC_004466.2 + 37999 0.67 0.792699
Target:  5'- gGUAGGAGUcaucuaCCUCuauGCCCUCcUUCu -3'
miRNA:   3'- gUAUCCUUAug----GGAGu--CGGGAGuAGG- -5'
17592 3' -51.4 NC_004466.2 + 41190 0.67 0.792699
Target:  5'- aGUAGGuguGUGCaugaCCUUGGCCCUCuUCg -3'
miRNA:   3'- gUAUCCu--UAUG----GGAGUCGGGAGuAGg -5'
17592 3' -51.4 NC_004466.2 + 25035 0.67 0.792699
Target:  5'- ---uGGAAcGCCCUagCAGCCCUagagcugguaAUCCa -3'
miRNA:   3'- guauCCUUaUGGGA--GUCGGGAg---------UAGG- -5'
17592 3' -51.4 NC_004466.2 + 10910 0.68 0.771949
Target:  5'- --gGGGAAUgGCCCagAGCCUUCugagCCu -3'
miRNA:   3'- guaUCCUUA-UGGGagUCGGGAGua--GG- -5'
17592 3' -51.4 NC_004466.2 + 17022 0.68 0.76133
Target:  5'- --cAGGggUuacuACCCUCGGggucaagcuCCUUCAUCUg -3'
miRNA:   3'- guaUCCuuA----UGGGAGUC---------GGGAGUAGG- -5'
17592 3' -51.4 NC_004466.2 + 19198 0.68 0.76133
Target:  5'- --aAGGcuacACCCgCAGCCCcCAUCCc -3'
miRNA:   3'- guaUCCuua-UGGGaGUCGGGaGUAGG- -5'
17592 3' -51.4 NC_004466.2 + 38867 0.7 0.619441
Target:  5'- --aAGGAGUuccagaucaccaucuACCCUCAGCCCUgcuaCCu -3'
miRNA:   3'- guaUCCUUA---------------UGGGAGUCGGGAgua-GG- -5'
17592 3' -51.4 NC_004466.2 + 14861 0.73 0.470274
Target:  5'- --cAGGAAUACCUg-AGCCCUCuacagCCa -3'
miRNA:   3'- guaUCCUUAUGGGagUCGGGAGua---GG- -5'
17592 3' -51.4 NC_004466.2 + 26422 0.75 0.384651
Target:  5'- --aAGGAAUugcucccucagccuaGCCCcaUCGGCCCUCGUgCCa -3'
miRNA:   3'- guaUCCUUA---------------UGGG--AGUCGGGAGUA-GG- -5'
17592 3' -51.4 NC_004466.2 + 24084 0.75 0.380926
Target:  5'- --gAGGAAUGCCgUaccgUAGCCCUCAagcuUCCa -3'
miRNA:   3'- guaUCCUUAUGGgA----GUCGGGAGU----AGG- -5'
17592 3' -51.4 NC_004466.2 + 37026 0.75 0.362664
Target:  5'- aGUGGGcAUACgaCUCGGCCCUCAaggcuuacUCCg -3'
miRNA:   3'- gUAUCCuUAUGg-GAGUCGGGAGU--------AGG- -5'
17592 3' -51.4 NC_004466.2 + 24899 0.8 0.181089
Target:  5'- -cUGGGAAUGgUCUUAGCCCUCGgaUCCa -3'
miRNA:   3'- guAUCCUUAUgGGAGUCGGGAGU--AGG- -5'
17592 3' -51.4 NC_004466.2 + 3691 1.12 0.001147
Target:  5'- gCAUAGGAAUACCCUCAGCCCUCAUCCu -3'
miRNA:   3'- -GUAUCCUUAUGGGAGUCGGGAGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.