miRNA: 3'- -GCGaGUCCaa-CCGauaGUCUCUUGAG- -5'
miRNA: 3'- gCG--AGUCCa-----ACCGAUAG----UCUCUUGAG- -5'
miRNA: 3'- gCGAGUcCAACCGaua-GUCUCUUGAg -5'
miRNA: 3'- -GCGAGUCCAACCGAUAGUCUCUUGAG- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 17593 | 3' | -51.2 | NC_004466.2 | + | 37900 | 0.66 | 0.842052 |
|
Target: 5'- uCGUaCAGGgugGGCccgUGGAGAACUCu -3' miRNA: 3'- -GCGaGUCCaa-CCGauaGUCUCUUGAG- -5' |
|||||||
| 17593 | 3' | -51.2 | NC_004466.2 | + | 33092 | 0.69 | 0.69473 |
|
Target: 5'- gGCcgUCAGGguuccaUGGUUAUCaacuGGGGGACUCa -3' miRNA: 3'- gCG--AGUCCa-----ACCGAUAG----UCUCUUGAG- -5' |
|||||||
| 17593 | 3' | -51.2 | NC_004466.2 | + | 1635 | 0.69 | 0.683271 |
|
Target: 5'- aGCUCA-GUUGGUagagCAGGGAGCUg -3' miRNA: 3'- gCGAGUcCAACCGaua-GUCUCUUGAg -5' |
|||||||
| 17593 | 3' | -51.2 | NC_004466.2 | + | 5126 | 1.11 | 0.001261 |
|
Target: 5'- gCGCUCAGGUUGGCUAUCAGAGAACUCa -3' miRNA: 3'- -GCGAGUCCAACCGAUAGUCUCUUGAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home