miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17594 5' -54.4 NC_004466.2 + 14192 0.66 0.699526
Target:  5'- uGCCCuugGUGCC-CugGGUgguGCCUCc- -3'
miRNA:   3'- cCGGG---UAUGGaGugCCAau-CGGAGuc -5'
17594 5' -54.4 NC_004466.2 + 43892 0.66 0.699526
Target:  5'- aGCCUuggcaAUCUUGCGGUcaUGGCCUCGa -3'
miRNA:   3'- cCGGGua---UGGAGUGCCA--AUCGGAGUc -5'
17594 5' -54.4 NC_004466.2 + 26396 0.67 0.632486
Target:  5'- aGCUUAgccAgCUCugGGUUGGCCUUAa -3'
miRNA:   3'- cCGGGUa--UgGAGugCCAAUCGGAGUc -5'
17594 5' -54.4 NC_004466.2 + 15140 0.68 0.59881
Target:  5'- gGGCCCAUugguuaGCaCUCugGGcaa-CCUCAGg -3'
miRNA:   3'- -CCGGGUA------UG-GAGugCCaaucGGAGUC- -5'
17594 5' -54.4 NC_004466.2 + 7548 0.68 0.576491
Target:  5'- aGCCUGUAgCUCguaggGCGGa-AGCCUCAGa -3'
miRNA:   3'- cCGGGUAUgGAG-----UGCCaaUCGGAGUC- -5'
17594 5' -54.4 NC_004466.2 + 45133 0.68 0.554362
Target:  5'- aGGUuaGUAaCCUCACGGUUAcGCCagUCGGu -3'
miRNA:   3'- -CCGggUAU-GGAGUGCCAAU-CGG--AGUC- -5'
17594 5' -54.4 NC_004466.2 + 44816 0.69 0.543391
Target:  5'- uGGCCUuuuCCUUGuCGGUauUGGCCUCGa -3'
miRNA:   3'- -CCGGGuauGGAGU-GCCA--AUCGGAGUc -5'
17594 5' -54.4 NC_004466.2 + 15325 0.69 0.543391
Target:  5'- -aCCCuguuggaucACCUgACGGUUAGCCUCu- -3'
miRNA:   3'- ccGGGua-------UGGAgUGCCAAUCGGAGuc -5'
17594 5' -54.4 NC_004466.2 + 36673 0.69 0.532491
Target:  5'- gGGCCgAUACuCUCG-GGUUcGCUUCAGc -3'
miRNA:   3'- -CCGGgUAUG-GAGUgCCAAuCGGAGUC- -5'
17594 5' -54.4 NC_004466.2 + 5920 0.69 0.500298
Target:  5'- uGGCCCAgGCUguagUCGgGGguggUGGUCUCGGg -3'
miRNA:   3'- -CCGGGUaUGG----AGUgCCa---AUCGGAGUC- -5'
17594 5' -54.4 NC_004466.2 + 45315 0.77 0.179813
Target:  5'- aGCCUugGCCUUGCGGUUGGCCUUg- -3'
miRNA:   3'- cCGGGuaUGGAGUGCCAAUCGGAGuc -5'
17594 5' -54.4 NC_004466.2 + 5211 1.1 0.000762
Target:  5'- aGGCCCAUACCUCACGGUUAGCCUCAGc -3'
miRNA:   3'- -CCGGGUAUGGAGUGCCAAUCGGAGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.