miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17595 3' -59.1 NC_004466.2 + 18971 0.66 0.462506
Target:  5'- uGACC-CCACCUUCG-CUGacaAGCCUa -3'
miRNA:   3'- uCUGGuGGUGGGGGCuGAUg--UCGGAc -5'
17595 3' -59.1 NC_004466.2 + 26294 0.66 0.452651
Target:  5'- uGGACCAUCACCUCUccaGACUcacuACGGCg-- -3'
miRNA:   3'- -UCUGGUGGUGGGGG---CUGA----UGUCGgac -5'
17595 3' -59.1 NC_004466.2 + 43208 0.66 0.433291
Target:  5'- cGAUCACUucGCCCuuGcUUACAGCCa- -3'
miRNA:   3'- uCUGGUGG--UGGGggCuGAUGUCGGac -5'
17595 3' -59.1 NC_004466.2 + 37287 0.67 0.399695
Target:  5'- cGACCGaugCACCCCCGACccuucguaccgcugGCGGUCa- -3'
miRNA:   3'- uCUGGUg--GUGGGGGCUGa-------------UGUCGGac -5'
17595 3' -59.1 NC_004466.2 + 1866 0.67 0.378243
Target:  5'- cGACCACCAuuaacUCCUCGuaGCU-CAGUCUGg -3'
miRNA:   3'- uCUGGUGGU-----GGGGGC--UGAuGUCGGAC- -5'
17595 3' -59.1 NC_004466.2 + 36285 0.67 0.378243
Target:  5'- uGGCCACCGCaagcgugaucuUCCCGAgCUGCAaGCCc- -3'
miRNA:   3'- uCUGGUGGUG-----------GGGGCU-GAUGU-CGGac -5'
17595 3' -59.1 NC_004466.2 + 39260 0.7 0.236824
Target:  5'- aGGACCACUACCCCgGA----GGUCUGg -3'
miRNA:   3'- -UCUGGUGGUGGGGgCUgaugUCGGAC- -5'
17595 3' -59.1 NC_004466.2 + 675 0.74 0.134844
Target:  5'- uAGGCCACCAuCCCCCGAguCUACGGaCa- -3'
miRNA:   3'- -UCUGGUGGU-GGGGGCU--GAUGUCgGac -5'
17595 3' -59.1 NC_004466.2 + 24916 0.75 0.110997
Target:  5'- uAGACCugggggaaACCCCaGGCUACAGCCUGa -3'
miRNA:   3'- -UCUGGugg-----UGGGGgCUGAUGUCGGAC- -5'
17595 3' -59.1 NC_004466.2 + 15399 0.8 0.047118
Target:  5'- uGGgCAUCAgCCUCGACUACAGCCUGg -3'
miRNA:   3'- uCUgGUGGUgGGGGCUGAUGUCGGAC- -5'
17595 3' -59.1 NC_004466.2 + 5995 1.09 0.000328
Target:  5'- gAGACCACCACCCCCGACUACAGCCUGg -3'
miRNA:   3'- -UCUGGUGGUGGGGGCUGAUGUCGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.