miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17595 5' -52.8 NC_004466.2 + 9172 0.66 0.793812
Target:  5'- aCCCuGAUG-GCcUUuGGUGGAgGCAUCg -3'
miRNA:   3'- -GGGuCUAUgCGuAGuCCACCU-CGUAG- -5'
17595 5' -52.8 NC_004466.2 + 37208 0.68 0.686003
Target:  5'- gCCAGcgGUACGaaggGUCGGG-GGuGCAUCg -3'
miRNA:   3'- gGGUC--UAUGCg---UAGUCCaCCuCGUAG- -5'
17595 5' -52.8 NC_004466.2 + 37964 0.68 0.663375
Target:  5'- cCCCAGGcccaaagccUugGCcaucgucuccGUCAGGUaGGAGuCAUCu -3'
miRNA:   3'- -GGGUCU---------AugCG----------UAGUCCA-CCUC-GUAG- -5'
17595 5' -52.8 NC_004466.2 + 11218 0.69 0.606457
Target:  5'- cCCCAGAUG---GUCuGGUGGAGUAccUCa -3'
miRNA:   3'- -GGGUCUAUgcgUAGuCCACCUCGU--AG- -5'
17595 5' -52.8 NC_004466.2 + 44071 0.69 0.595103
Target:  5'- aCCGGAccUAUgGUcgCAGGcUGGGGCGUCu -3'
miRNA:   3'- gGGUCU--AUG-CGuaGUCC-ACCUCGUAG- -5'
17595 5' -52.8 NC_004466.2 + 32693 0.7 0.539018
Target:  5'- aCCCAGG---GCAUC--GUGGGGCGUCg -3'
miRNA:   3'- -GGGUCUaugCGUAGucCACCUCGUAG- -5'
17595 5' -52.8 NC_004466.2 + 11896 0.71 0.484844
Target:  5'- cCCCAGAccgACGUAUCgguaucccagGGGuUGGAGuCGUCa -3'
miRNA:   3'- -GGGUCUa--UGCGUAG----------UCC-ACCUC-GUAG- -5'
17595 5' -52.8 NC_004466.2 + 5961 1.11 0.000904
Target:  5'- uCCCAGAUACGCAUCAGGUGGAGCAUCu -3'
miRNA:   3'- -GGGUCUAUGCGUAGUCCACCUCGUAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.