miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17596 5' -46.4 NC_004466.2 + 35455 0.66 0.982806
Target:  5'- gAGACAGCGCc-GACUccgugAGCaAGAACg -3'
miRNA:   3'- -UCUGUCGUGauCUGAua---UCGgUUUUG- -5'
17596 5' -46.4 NC_004466.2 + 27825 0.66 0.982806
Target:  5'- uGGAgCAGCAauggAGACUGga-CCGAAGCg -3'
miRNA:   3'- -UCU-GUCGUga--UCUGAUaucGGUUUUG- -5'
17596 5' -46.4 NC_004466.2 + 15322 0.66 0.980387
Target:  5'- -aAUGGC-CcAGGCUGUAGUCGAGGCu -3'
miRNA:   3'- ucUGUCGuGaUCUGAUAUCGGUUUUG- -5'
17596 5' -46.4 NC_004466.2 + 15758 0.67 0.974799
Target:  5'- cAGGCuGCugUAGAacg-GGCCAAAc- -3'
miRNA:   3'- -UCUGuCGugAUCUgauaUCGGUUUug -5'
17596 5' -46.4 NC_004466.2 + 24829 0.67 0.968134
Target:  5'- -aGCAGCAUccgucAGGCUGUAGCCu---- -3'
miRNA:   3'- ucUGUCGUGa----UCUGAUAUCGGuuuug -5'
17596 5' -46.4 NC_004466.2 + 36981 0.67 0.968134
Target:  5'- aAGGCGGC-CUGGAUgac-GCCAucGCa -3'
miRNA:   3'- -UCUGUCGuGAUCUGauauCGGUuuUG- -5'
17596 5' -46.4 NC_004466.2 + 40292 0.67 0.964369
Target:  5'- cAGAcCGGCACccaGGGCgcUAGCCGAGGu -3'
miRNA:   3'- -UCU-GUCGUGa--UCUGauAUCGGUUUUg -5'
17596 5' -46.4 NC_004466.2 + 29091 0.67 0.960304
Target:  5'- -aGCAGCAUUAGAagaGUGGCUAcGGACa -3'
miRNA:   3'- ucUGUCGUGAUCUga-UAUCGGU-UUUG- -5'
17596 5' -46.4 NC_004466.2 + 12876 0.69 0.909169
Target:  5'- -cACAGCAguUUGGAUUGUAGCCcgauuaAGAACa -3'
miRNA:   3'- ucUGUCGU--GAUCUGAUAUCGG------UUUUG- -5'
17596 5' -46.4 NC_004466.2 + 24849 0.7 0.89416
Target:  5'- gAGugAGUACUAuGACUGgaagGGCUacGAAGCu -3'
miRNA:   3'- -UCugUCGUGAU-CUGAUa---UCGG--UUUUG- -5'
17596 5' -46.4 NC_004466.2 + 15833 0.71 0.860346
Target:  5'- cAGGCugaaacCGCUAGAC-GUGGCCAGGAUa -3'
miRNA:   3'- -UCUGuc----GUGAUCUGaUAUCGGUUUUG- -5'
17596 5' -46.4 NC_004466.2 + 6511 1.12 0.003408
Target:  5'- cAGACAGCACUAGACUAUAGCCAAAACg -3'
miRNA:   3'- -UCUGUCGUGAUCUGAUAUCGGUUUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.