miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17600 5' -59.9 NC_004466.2 + 20892 0.66 0.412677
Target:  5'- aAUCCCAAGGGGCCuuuaGGuuaGCC-CCGa -3'
miRNA:   3'- -UAGGGUUCUCCGGc---CCug-UGGuGGUc -5'
17600 5' -59.9 NC_004466.2 + 19574 0.66 0.412677
Target:  5'- -gCCCAGGuGGCCGagccuacgucguGGACguACC-CCAGg -3'
miRNA:   3'- uaGGGUUCuCCGGC------------CCUG--UGGuGGUC- -5'
17600 5' -59.9 NC_004466.2 + 14283 0.66 0.412677
Target:  5'- cUCCgAAGAGuGCUcccagGGaGGCACCACcCAGg -3'
miRNA:   3'- uAGGgUUCUC-CGG-----CC-CUGUGGUG-GUC- -5'
17600 5' -59.9 NC_004466.2 + 19409 0.66 0.411748
Target:  5'- -gCCCAGGAGuaccucuGCCGGGGuggUACCucuCCGGu -3'
miRNA:   3'- uaGGGUUCUC-------CGGCCCU---GUGGu--GGUC- -5'
17600 5' -59.9 NC_004466.2 + 17422 0.66 0.393456
Target:  5'- -gCCUAGGGGuacuaucaggaaaGCCuGGGACGCCAUgGGg -3'
miRNA:   3'- uaGGGUUCUC-------------CGG-CCCUGUGGUGgUC- -5'
17600 5' -59.9 NC_004466.2 + 39913 0.66 0.382736
Target:  5'- -cCCCAAGAGGCCaccggaugaugauuGGGuuUACUACCu- -3'
miRNA:   3'- uaGGGUUCUCCGG--------------CCCu-GUGGUGGuc -5'
17600 5' -59.9 NC_004466.2 + 33804 0.66 0.367887
Target:  5'- aGUCC---GAGGCUGGcaauACACCACCGGc -3'
miRNA:   3'- -UAGGguuCUCCGGCCc---UGUGGUGGUC- -5'
17600 5' -59.9 NC_004466.2 + 38311 0.67 0.326551
Target:  5'- cAUCCCAccacuccuuggGGAGaucCUcGGACGCCGCCAGg -3'
miRNA:   3'- -UAGGGU-----------UCUCc--GGcCCUGUGGUGGUC- -5'
17600 5' -59.9 NC_004466.2 + 17055 0.68 0.311008
Target:  5'- --aCCGAGAGGCCa--GCACCACCuAGg -3'
miRNA:   3'- uagGGUUCUCCGGcccUGUGGUGG-UC- -5'
17600 5' -59.9 NC_004466.2 + 35661 0.68 0.280922
Target:  5'- cAUCCCGAGAGGUCaucgcauGGGAU-CC-CCGGa -3'
miRNA:   3'- -UAGGGUUCUCCGG-------CCCUGuGGuGGUC- -5'
17600 5' -59.9 NC_004466.2 + 13193 0.69 0.267783
Target:  5'- -gCCCaAAGGGGCuUGGGAUACUugCAa -3'
miRNA:   3'- uaGGG-UUCUCCG-GCCCUGUGGugGUc -5'
17600 5' -59.9 NC_004466.2 + 11323 1.06 0.000437
Target:  5'- gAUCCCAAGAGGCCGGGACACCACCAGc -3'
miRNA:   3'- -UAGGGUUCUCCGGCCCUGUGGUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.