Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17601 | 3' | -49.7 | NC_004466.2 | + | 33312 | 0.67 | 0.87831 |
Target: 5'- ----uUCGGCCAGgacgaucGGGGCcGGCACCa -3' miRNA: 3'- ccauuAGUCGGUC-------UCUCGaUUGUGGa -5' |
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17601 | 3' | -49.7 | NC_004466.2 | + | 41935 | 0.67 | 0.868322 |
Target: 5'- aGGUAAuaagguugucguccUCAGCCAGAGcgGGUUcAGCAuCCUc -3' miRNA: 3'- -CCAUU--------------AGUCGGUCUC--UCGA-UUGU-GGA- -5' |
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17601 | 3' | -49.7 | NC_004466.2 | + | 19447 | 0.67 | 0.862311 |
Target: 5'- -----gCAGCCAGAGcaccuucgguAGCU-GCACCUg -3' miRNA: 3'- ccauuaGUCGGUCUC----------UCGAuUGUGGA- -5' |
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17601 | 3' | -49.7 | NC_004466.2 | + | 9904 | 0.68 | 0.844413 |
Target: 5'- cGGUuGUCGGUCAGAGuGU--GCAUCa -3' miRNA: 3'- -CCAuUAGUCGGUCUCuCGauUGUGGa -5' |
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17601 | 3' | -49.7 | NC_004466.2 | + | 21920 | 0.68 | 0.825508 |
Target: 5'- uGUGAUUAcGCaGGAGGGCU-ACGCCUc -3' miRNA: 3'- cCAUUAGU-CGgUCUCUCGAuUGUGGA- -5' |
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17601 | 3' | -49.7 | NC_004466.2 | + | 15097 | 0.69 | 0.774439 |
Target: 5'- gGGUGua-GGCCAGAGGGCagcucagAAgGCCa -3' miRNA: 3'- -CCAUuagUCGGUCUCUCGa------UUgUGGa -5' |
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17601 | 3' | -49.7 | NC_004466.2 | + | 33237 | 0.7 | 0.719225 |
Target: 5'- cGGcaugGGUCGGCCAGGG-GCUAuuacuaacGCACUa -3' miRNA: 3'- -CCa---UUAGUCGGUCUCuCGAU--------UGUGGa -5' |
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17601 | 3' | -49.7 | NC_004466.2 | + | 9801 | 0.71 | 0.69636 |
Target: 5'- ----cUCAGCCAGGGcuUUAGCACCa -3' miRNA: 3'- ccauuAGUCGGUCUCucGAUUGUGGa -5' |
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17601 | 3' | -49.7 | NC_004466.2 | + | 16599 | 0.71 | 0.684816 |
Target: 5'- --gGAUCAGCCGGAGcAGCcaaAGCGCUc -3' miRNA: 3'- ccaUUAGUCGGUCUC-UCGa--UUGUGGa -5' |
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17601 | 3' | -49.7 | NC_004466.2 | + | 8631 | 0.71 | 0.673214 |
Target: 5'- aGGUGuauUCAaCCAG-GAGCUGGCGCUUc -3' miRNA: 3'- -CCAUu--AGUcGGUCuCUCGAUUGUGGA- -5' |
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17601 | 3' | -49.7 | NC_004466.2 | + | 13735 | 1.12 | 0.001754 |
Target: 5'- aGGUAAUCAGCCAGAGAGCUAACACCUg -3' miRNA: 3'- -CCAUUAGUCGGUCUCUCGAUUGUGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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