miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17601 3' -49.7 NC_004466.2 + 33312 0.67 0.87831
Target:  5'- ----uUCGGCCAGgacgaucGGGGCcGGCACCa -3'
miRNA:   3'- ccauuAGUCGGUC-------UCUCGaUUGUGGa -5'
17601 3' -49.7 NC_004466.2 + 41935 0.67 0.868322
Target:  5'- aGGUAAuaagguugucguccUCAGCCAGAGcgGGUUcAGCAuCCUc -3'
miRNA:   3'- -CCAUU--------------AGUCGGUCUC--UCGA-UUGU-GGA- -5'
17601 3' -49.7 NC_004466.2 + 19447 0.67 0.862311
Target:  5'- -----gCAGCCAGAGcaccuucgguAGCU-GCACCUg -3'
miRNA:   3'- ccauuaGUCGGUCUC----------UCGAuUGUGGA- -5'
17601 3' -49.7 NC_004466.2 + 9904 0.68 0.844413
Target:  5'- cGGUuGUCGGUCAGAGuGU--GCAUCa -3'
miRNA:   3'- -CCAuUAGUCGGUCUCuCGauUGUGGa -5'
17601 3' -49.7 NC_004466.2 + 21920 0.68 0.825508
Target:  5'- uGUGAUUAcGCaGGAGGGCU-ACGCCUc -3'
miRNA:   3'- cCAUUAGU-CGgUCUCUCGAuUGUGGA- -5'
17601 3' -49.7 NC_004466.2 + 15097 0.69 0.774439
Target:  5'- gGGUGua-GGCCAGAGGGCagcucagAAgGCCa -3'
miRNA:   3'- -CCAUuagUCGGUCUCUCGa------UUgUGGa -5'
17601 3' -49.7 NC_004466.2 + 33237 0.7 0.719225
Target:  5'- cGGcaugGGUCGGCCAGGG-GCUAuuacuaacGCACUa -3'
miRNA:   3'- -CCa---UUAGUCGGUCUCuCGAU--------UGUGGa -5'
17601 3' -49.7 NC_004466.2 + 9801 0.71 0.69636
Target:  5'- ----cUCAGCCAGGGcuUUAGCACCa -3'
miRNA:   3'- ccauuAGUCGGUCUCucGAUUGUGGa -5'
17601 3' -49.7 NC_004466.2 + 16599 0.71 0.684816
Target:  5'- --gGAUCAGCCGGAGcAGCcaaAGCGCUc -3'
miRNA:   3'- ccaUUAGUCGGUCUC-UCGa--UUGUGGa -5'
17601 3' -49.7 NC_004466.2 + 8631 0.71 0.673214
Target:  5'- aGGUGuauUCAaCCAG-GAGCUGGCGCUUc -3'
miRNA:   3'- -CCAUu--AGUcGGUCuCUCGAUUGUGGA- -5'
17601 3' -49.7 NC_004466.2 + 13735 1.12 0.001754
Target:  5'- aGGUAAUCAGCCAGAGAGCUAACACCUg -3'
miRNA:   3'- -CCAUUAGUCGGUCUCUCGAUUGUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.