miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17602 3' -59.6 NC_004466.2 + 33314 0.66 0.451178
Target:  5'- cGGcCAGGACgauCGGGGCCGgCACCAg- -3'
miRNA:   3'- uCCcGUCUUG---GCUCCGGUgGUGGUgg -5'
17602 3' -59.6 NC_004466.2 + 25344 0.66 0.431986
Target:  5'- aGGGGCAGc-CCaaaGGGCaUACCcCCGCCu -3'
miRNA:   3'- -UCCCGUCuuGGc--UCCG-GUGGuGGUGG- -5'
17602 3' -59.6 NC_004466.2 + 35470 0.66 0.431986
Target:  5'- cAGGGCAGcAGCCGccAGacCCAUCucacgGCCACCc -3'
miRNA:   3'- -UCCCGUC-UUGGC--UCc-GGUGG-----UGGUGG- -5'
17602 3' -59.6 NC_004466.2 + 32773 0.66 0.431986
Target:  5'- cAGGG-AGAuCCccuGGCCACUAUgGCCa -3'
miRNA:   3'- -UCCCgUCUuGGcu-CCGGUGGUGgUGG- -5'
17602 3' -59.6 NC_004466.2 + 17437 0.66 0.41328
Target:  5'- aGGGGCguuAGGAUCGguauGGGCUgaGCCugCugCa -3'
miRNA:   3'- -UCCCG---UCUUGGC----UCCGG--UGGugGugG- -5'
17602 3' -59.6 NC_004466.2 + 36947 0.66 0.41328
Target:  5'- aGGGGCA--GCCGAGGUacaACgUAUCAUCa -3'
miRNA:   3'- -UCCCGUcuUGGCUCCGg--UG-GUGGUGG- -5'
17602 3' -59.6 NC_004466.2 + 41046 0.66 0.41328
Target:  5'- cGGGaguGACaGGGGCCACaauCCACCa -3'
miRNA:   3'- uCCCgucUUGgCUCCGGUGgu-GGUGG- -5'
17602 3' -59.6 NC_004466.2 + 14350 0.67 0.39868
Target:  5'- uGGGCAGGAgcggguacaguugagUCGucaAGGCUcCUACCGCCc -3'
miRNA:   3'- uCCCGUCUU---------------GGC---UCCGGuGGUGGUGG- -5'
17602 3' -59.6 NC_004466.2 + 42374 0.67 0.386179
Target:  5'- cGGGGUAGAAcCCGcAGucaaCAUCGCCGCUg -3'
miRNA:   3'- -UCCCGUCUU-GGC-UCcg--GUGGUGGUGG- -5'
17602 3' -59.6 NC_004466.2 + 16948 0.67 0.360277
Target:  5'- cAGGaaAGAACCuauGAGGgCACCACCcauacgACCa -3'
miRNA:   3'- -UCCcgUCUUGG---CUCCgGUGGUGG------UGG- -5'
17602 3' -59.6 NC_004466.2 + 993 0.68 0.335612
Target:  5'- aGGGGCAu-ACCccuggggauAGGCCACCcCCACUu -3'
miRNA:   3'- -UCCCGUcuUGGc--------UCCGGUGGuGGUGG- -5'
17602 3' -59.6 NC_004466.2 + 40256 0.68 0.319865
Target:  5'- cAGGaagaAGAGCCcguagaagaugGAGGCCACCAUCagACCg -3'
miRNA:   3'- -UCCcg--UCUUGG-----------CUCCGGUGGUGG--UGG- -5'
17602 3' -59.6 NC_004466.2 + 6535 0.68 0.319865
Target:  5'- gAGGGC-GAAUgGaAGGCUACgGCCcCCa -3'
miRNA:   3'- -UCCCGuCUUGgC-UCCGGUGgUGGuGG- -5'
17602 3' -59.6 NC_004466.2 + 32579 0.68 0.319865
Target:  5'- uGGGaCAGGauaGCCc-GGCCACgCACCACg -3'
miRNA:   3'- uCCC-GUCU---UGGcuCCGGUG-GUGGUGg -5'
17602 3' -59.6 NC_004466.2 + 17682 0.69 0.297297
Target:  5'- uGGGCGucaauacucCUGAGGCUACCGCCcuCCg -3'
miRNA:   3'- uCCCGUcuu------GGCUCCGGUGGUGGu-GG- -5'
17602 3' -59.6 NC_004466.2 + 13835 0.69 0.269155
Target:  5'- cGGGUguAGCCGAGGgUAUUGCUACCg -3'
miRNA:   3'- uCCCGucUUGGCUCCgGUGGUGGUGG- -5'
17602 3' -59.6 NC_004466.2 + 11335 0.7 0.255909
Target:  5'- uAGGGUccguuGGAuCCcaaGAGGCCGggaCACCACCa -3'
miRNA:   3'- -UCCCG-----UCUuGG---CUCCGGUg--GUGGUGG- -5'
17602 3' -59.6 NC_004466.2 + 727 0.7 0.247589
Target:  5'- aGGGGCuugacaaaccccgcGGAACCu-GGCCuaaugGCCACCACg -3'
miRNA:   3'- -UCCCG--------------UCUUGGcuCCGG-----UGGUGGUGg -5'
17602 3' -59.6 NC_004466.2 + 17092 0.72 0.188865
Target:  5'- uGGGGCAGcgauaacaccagcAcccgcaguaucuaguACCGAgaGGCCAgCACCACCu -3'
miRNA:   3'- -UCCCGUC-------------U---------------UGGCU--CCGGUgGUGGUGG- -5'
17602 3' -59.6 NC_004466.2 + 32807 0.72 0.187368
Target:  5'- uGGGUAcGAACgaaGAuacGGCCACCACCAUUa -3'
miRNA:   3'- uCCCGU-CUUGg--CU---CCGGUGGUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.