miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17606 5' -52.7 NC_004466.2 + 14532 0.66 0.792699
Target:  5'- aGGAGAGCCgc-GAGuGCugcuCCGCCCAu -3'
miRNA:   3'- cUUUCUUGGauaCUCcCGu---GGUGGGU- -5'
17606 5' -52.7 NC_004466.2 + 23792 0.66 0.792699
Target:  5'- -cAAGAcCCUA-GAGGcaACCACCCAg -3'
miRNA:   3'- cuUUCUuGGAUaCUCCcgUGGUGGGU- -5'
17606 5' -52.7 NC_004466.2 + 19999 0.66 0.792699
Target:  5'- --uGGAACCgacGGGGGU-CUACCCGg -3'
miRNA:   3'- cuuUCUUGGauaCUCCCGuGGUGGGU- -5'
17606 5' -52.7 NC_004466.2 + 17248 0.67 0.72866
Target:  5'- --uAGGGCCUGUu-GGGCACCagagguaacACCCu -3'
miRNA:   3'- cuuUCUUGGAUAcuCCCGUGG---------UGGGu -5'
17606 5' -52.7 NC_004466.2 + 24687 0.67 0.702952
Target:  5'- -uAAGAAUCUcuucccaaugcuugGUGAGGGCAaaugcuUCACCCu -3'
miRNA:   3'- cuUUCUUGGA--------------UACUCCCGU------GGUGGGu -5'
17606 5' -52.7 NC_004466.2 + 40767 0.68 0.660823
Target:  5'- aGGGAGAagACC-AUGAGGGCcUCGCCg- -3'
miRNA:   3'- -CUUUCU--UGGaUACUCCCGuGGUGGgu -5'
17606 5' -52.7 NC_004466.2 + 21798 0.69 0.603361
Target:  5'- aGGGGGugCUGcUGAGGGUAaaGCCCGa -3'
miRNA:   3'- cUUUCUugGAU-ACUCCCGUggUGGGU- -5'
17606 5' -52.7 NC_004466.2 + 14280 0.7 0.557804
Target:  5'- cGAAGAguGCUcccaGGGaGGCACCACCCAg -3'
miRNA:   3'- cUUUCU--UGGaua-CUC-CCGUGGUGGGU- -5'
17606 5' -52.7 NC_004466.2 + 28432 0.7 0.557804
Target:  5'- cGAAGGuAAUCccc-AGGGCACCACCCc -3'
miRNA:   3'- -CUUUC-UUGGauacUCCCGUGGUGGGu -5'
17606 5' -52.7 NC_004466.2 + 16946 1.08 0.001341
Target:  5'- gGAAAGAACCUAUGAGGGCACCACCCAu -3'
miRNA:   3'- -CUUUCUUGGAUACUCCCGUGGUGGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.