miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17607 5' -56.3 NC_004466.2 + 34573 0.66 0.591552
Target:  5'- uGGCAucCCACCagaccAGGGCAGCAGcacCCGa -3'
miRNA:   3'- gUCGU--GGUGGa----UCCUGUCGUCa--GGUc -5'
17607 5' -56.3 NC_004466.2 + 35458 0.66 0.569319
Target:  5'- -cGUGCUgacaGCC-AGGGCAGCAGccgCCAGa -3'
miRNA:   3'- guCGUGG----UGGaUCCUGUCGUCa--GGUC- -5'
17607 5' -56.3 NC_004466.2 + 20191 0.66 0.547298
Target:  5'- gCAGUguugacaacguuACCACCcAGGugAGUAGUCacaAGg -3'
miRNA:   3'- -GUCG------------UGGUGGaUCCugUCGUCAGg--UC- -5'
17607 5' -56.3 NC_004466.2 + 1038 0.67 0.492531
Target:  5'- cUAGCcCCucCCUAGGAUaccauaaGGCuAGUCCGGg -3'
miRNA:   3'- -GUCGuGGu-GGAUCCUG-------UCG-UCAGGUC- -5'
17607 5' -56.3 NC_004466.2 + 42989 0.67 0.483121
Target:  5'- gUAGCGCCGCCUAGGGaAGCcauGUUg-- -3'
miRNA:   3'- -GUCGUGGUGGAUCCUgUCGu--CAGguc -5'
17607 5' -56.3 NC_004466.2 + 19429 0.68 0.472769
Target:  5'- gUAGCugCACCUGcGACAG-GGcCCAGg -3'
miRNA:   3'- -GUCGugGUGGAUcCUGUCgUCaGGUC- -5'
17607 5' -56.3 NC_004466.2 + 40695 0.68 0.472769
Target:  5'- -cGCGaCACCUGGGGCaAGCuGUgCCGGg -3'
miRNA:   3'- guCGUgGUGGAUCCUG-UCGuCA-GGUC- -5'
17607 5' -56.3 NC_004466.2 + 14262 0.68 0.462529
Target:  5'- aGGCACCACCcAGGGCaccaagGGCAGaaCCGa -3'
miRNA:   3'- gUCGUGGUGGaUCCUG------UCGUCa-GGUc -5'
17607 5' -56.3 NC_004466.2 + 19635 0.68 0.462529
Target:  5'- aGGCucgGCCACCUGGGcCGGCuGcUUCAGu -3'
miRNA:   3'- gUCG---UGGUGGAUCCuGUCGuC-AGGUC- -5'
17607 5' -56.3 NC_004466.2 + 38111 0.68 0.452407
Target:  5'- -uGCGCagGCCacgAGGACAGCAaccacgggGUCCAGu -3'
miRNA:   3'- guCGUGg-UGGa--UCCUGUCGU--------CAGGUC- -5'
17607 5' -56.3 NC_004466.2 + 17046 1.09 0.000508
Target:  5'- cCAGCACCACCUAGGACAGCAGUCCAGg -3'
miRNA:   3'- -GUCGUGGUGGAUCCUGUCGUCAGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.