Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17608 | 5' | -53.2 | NC_004466.2 | + | 17380 | 1.11 | 0.000822 |
Target: 5'- gUUAAGACCAGAGGAUACAGCACCCCCa -3' miRNA: 3'- -AAUUCUGGUCUCCUAUGUCGUGGGGG- -5' |
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17608 | 5' | -53.2 | NC_004466.2 | + | 2503 | 0.8 | 0.120572 |
Target: 5'- --uGGACCGGAGGAUACGGcCACCuacagcguCCCg -3' miRNA: 3'- aauUCUGGUCUCCUAUGUC-GUGG--------GGG- -5' |
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17608 | 5' | -53.2 | NC_004466.2 | + | 43218 | 0.77 | 0.184914 |
Target: 5'- ---cGACCgGGAGGAaggagcuguuugcUACAGCACCUCCa -3' miRNA: 3'- aauuCUGG-UCUCCU-------------AUGUCGUGGGGG- -5' |
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17608 | 5' | -53.2 | NC_004466.2 | + | 44529 | 0.73 | 0.351741 |
Target: 5'- --uAGACCAGGGGcgcgucauaGUACA-CACCCCUg -3' miRNA: 3'- aauUCUGGUCUCC---------UAUGUcGUGGGGG- -5' |
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17608 | 5' | -53.2 | NC_004466.2 | + | 986 | 0.72 | 0.369572 |
Target: 5'- -aGGGGCUAGGGGcAUACcccuggggauaGGcCACCCCCa -3' miRNA: 3'- aaUUCUGGUCUCC-UAUG-----------UC-GUGGGGG- -5' |
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17608 | 5' | -53.2 | NC_004466.2 | + | 34584 | 0.71 | 0.436667 |
Target: 5'- --cAGACCAG-GGcaGCAGCACCCg- -3' miRNA: 3'- aauUCUGGUCuCCuaUGUCGUGGGgg -5' |
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17608 | 5' | -53.2 | NC_004466.2 | + | 35317 | 0.71 | 0.467491 |
Target: 5'- -gGAGAaacUCAGAGGAguUGCGGCugCCgCa -3' miRNA: 3'- aaUUCU---GGUCUCCU--AUGUCGugGGgG- -5' |
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17608 | 5' | -53.2 | NC_004466.2 | + | 125 | 0.68 | 0.588512 |
Target: 5'- -aGGGGCgAGuGGAUACGaagACCCCCg -3' miRNA: 3'- aaUUCUGgUCuCCUAUGUcg-UGGGGG- -5' |
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17608 | 5' | -53.2 | NC_004466.2 | + | 31686 | 0.68 | 0.634294 |
Target: 5'- -cAAGGCCguAGAGGAUGaguuGCGCCUgCu -3' miRNA: 3'- aaUUCUGG--UCUCCUAUgu--CGUGGGgG- -5' |
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17608 | 5' | -53.2 | NC_004466.2 | + | 41913 | 0.68 | 0.634294 |
Target: 5'- ----aGCCAGAgcGGGUuCAGCAUCCUCg -3' miRNA: 3'- aauucUGGUCU--CCUAuGUCGUGGGGG- -5' |
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17608 | 5' | -53.2 | NC_004466.2 | + | 12986 | 0.68 | 0.588512 |
Target: 5'- -gGAGucaccACUAGGGGAUAaguaaacGUACCCCCg -3' miRNA: 3'- aaUUC-----UGGUCUCCUAUgu-----CGUGGGGG- -5' |
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17608 | 5' | -53.2 | NC_004466.2 | + | 18029 | 0.68 | 0.634293 |
Target: 5'- -gGGGAcgguuugcCCAGAGuGAUGCAGUACCUa- -3' miRNA: 3'- aaUUCU--------GGUCUC-CUAUGUCGUGGGgg -5' |
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17608 | 5' | -53.2 | NC_004466.2 | + | 15102 | 0.68 | 0.593072 |
Target: 5'- --uAGGCCAGAGGGcagcucagaaggccACAGgagGCCCCCa -3' miRNA: 3'- aauUCUGGUCUCCUa-------------UGUCg--UGGGGG- -5' |
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17608 | 5' | -53.2 | NC_004466.2 | + | 25421 | 0.67 | 0.657215 |
Target: 5'- aUGAGGCgGGGGuAUGCccuuugGGCugCCCCu -3' miRNA: 3'- aAUUCUGgUCUCcUAUG------UCGugGGGG- -5' |
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17608 | 5' | -53.2 | NC_004466.2 | + | 44614 | 0.67 | 0.668643 |
Target: 5'- -cGGGugcGCCAGGGGuguGUACuaugacGCGCCCCUg -3' miRNA: 3'- aaUUC---UGGUCUCC---UAUGu-----CGUGGGGG- -5' |
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17608 | 5' | -53.2 | NC_004466.2 | + | 40699 | 0.67 | 0.702655 |
Target: 5'- --uGGcCCAGGGGuUGCuGGUACuCCCCa -3' miRNA: 3'- aauUCuGGUCUCCuAUG-UCGUG-GGGG- -5' |
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17608 | 5' | -53.2 | NC_004466.2 | + | 16488 | 0.67 | 0.668643 |
Target: 5'- -gAAGuaaccCCGGAGGuuGUACcugaAGCugCCCCa -3' miRNA: 3'- aaUUCu----GGUCUCC--UAUG----UCGugGGGG- -5' |
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17608 | 5' | -53.2 | NC_004466.2 | + | 33918 | 0.66 | 0.735996 |
Target: 5'- -gGAGAuacuuCCAcGAGGGUGguGUACCCUUc -3' miRNA: 3'- aaUUCU-----GGU-CUCCUAUguCGUGGGGG- -5' |
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17608 | 5' | -53.2 | NC_004466.2 | + | 17340 | 0.66 | 0.713861 |
Target: 5'- ---uGGCCAGcaacaAGGAUGCAGCagGCUcagCCCa -3' miRNA: 3'- aauuCUGGUC-----UCCUAUGUCG--UGG---GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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