miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1761 3' -56.3 NC_001347.2 + 39522 0.66 0.951135
Target:  5'- gGGCGCGGCGacauGCCGuugcGCUGGG-CCAu -3'
miRNA:   3'- -CUGCGCCGCg---UGGUua--CGGCUUaGGU- -5'
1761 3' -56.3 NC_001347.2 + 88679 0.66 0.951135
Target:  5'- uGGCGcCGGCGCGCCc-UGCUGGGa--- -3'
miRNA:   3'- -CUGC-GCCGCGUGGuuACGGCUUaggu -5'
1761 3' -56.3 NC_001347.2 + 156633 0.66 0.947015
Target:  5'- -cCGCuGGCgGCGCCGcUGCCGGG-CCu -3'
miRNA:   3'- cuGCG-CCG-CGUGGUuACGGCUUaGGu -5'
1761 3' -56.3 NC_001347.2 + 81495 0.66 0.947015
Target:  5'- cGGCGgGuGCGCACCGccgGUGCUGcugcugacuUCCAc -3'
miRNA:   3'- -CUGCgC-CGCGUGGU---UACGGCuu-------AGGU- -5'
1761 3' -56.3 NC_001347.2 + 63759 0.66 0.947015
Target:  5'- cGAuCGCGGCGCcCCAcuUGCCgcuguacaacGAAUUCAc -3'
miRNA:   3'- -CU-GCGCCGCGuGGUu-ACGG----------CUUAGGU- -5'
1761 3' -56.3 NC_001347.2 + 138901 0.66 0.947015
Target:  5'- aGugGCGGCGUAgCCAuUGUCu--UCCGu -3'
miRNA:   3'- -CugCGCCGCGU-GGUuACGGcuuAGGU- -5'
1761 3' -56.3 NC_001347.2 + 149448 0.66 0.947015
Target:  5'- cGugGCcGCGCuAUCGAUGCCu-GUCCu -3'
miRNA:   3'- -CugCGcCGCG-UGGUUACGGcuUAGGu -5'
1761 3' -56.3 NC_001347.2 + 73720 0.66 0.942672
Target:  5'- -cCGCGG-GCACCGccGCCGGAggcgcgguUCCc -3'
miRNA:   3'- cuGCGCCgCGUGGUuaCGGCUU--------AGGu -5'
1761 3' -56.3 NC_001347.2 + 200266 0.66 0.942672
Target:  5'- aGCcUGGCGC-UCAcgGCCGAGUUCGg -3'
miRNA:   3'- cUGcGCCGCGuGGUuaCGGCUUAGGU- -5'
1761 3' -56.3 NC_001347.2 + 1209 0.66 0.938103
Target:  5'- cGCGCGGCGUuuuugGCCAAcagcacggGCCGcg-CCAu -3'
miRNA:   3'- cUGCGCCGCG-----UGGUUa-------CGGCuuaGGU- -5'
1761 3' -56.3 NC_001347.2 + 38807 0.66 0.927771
Target:  5'- --aGCGGUacagccGCACCAccucgcccgcgccGUGCCGAAaCCAc -3'
miRNA:   3'- cugCGCCG------CGUGGU-------------UACGGCUUaGGU- -5'
1761 3' -56.3 NC_001347.2 + 37967 0.67 0.923034
Target:  5'- aGCGCGGcCGCucCCAcUGCuCGcGGUCCAg -3'
miRNA:   3'- cUGCGCC-GCGu-GGUuACG-GC-UUAGGU- -5'
1761 3' -56.3 NC_001347.2 + 160965 0.67 0.923034
Target:  5'- --aGCGGCGCcgccauGCCAGggGCCGA--CCAu -3'
miRNA:   3'- cugCGCCGCG------UGGUUa-CGGCUuaGGU- -5'
1761 3' -56.3 NC_001347.2 + 155980 0.67 0.917555
Target:  5'- cACGCGGCGUAUCcucaaGuuGggUCCc -3'
miRNA:   3'- cUGCGCCGCGUGGuua--CggCuuAGGu -5'
1761 3' -56.3 NC_001347.2 + 93572 0.67 0.917555
Target:  5'- cACGgaGGCGCACgCGAUGCUGcacAUCCc -3'
miRNA:   3'- cUGCg-CCGCGUG-GUUACGGCu--UAGGu -5'
1761 3' -56.3 NC_001347.2 + 83898 0.67 0.917555
Target:  5'- gGACGCGGUaGCGgCAGUGUCaAGUaCCAg -3'
miRNA:   3'- -CUGCGCCG-CGUgGUUACGGcUUA-GGU- -5'
1761 3' -56.3 NC_001347.2 + 88381 0.67 0.915867
Target:  5'- cGACGUGGacgGCACUAcggGCCGAcgcagguucuccuuGUCCGa -3'
miRNA:   3'- -CUGCGCCg--CGUGGUua-CGGCU--------------UAGGU- -5'
1761 3' -56.3 NC_001347.2 + 161579 0.67 0.905916
Target:  5'- cGCGCGGCGcCGCCGGcuacgcGuCCGggUuCCAg -3'
miRNA:   3'- cUGCGCCGC-GUGGUUa-----C-GGCuuA-GGU- -5'
1761 3' -56.3 NC_001347.2 + 165866 0.67 0.905916
Target:  5'- --gGCGGCagggaCACCGAUGUCGAG-CCGg -3'
miRNA:   3'- cugCGCCGc----GUGGUUACGGCUUaGGU- -5'
1761 3' -56.3 NC_001347.2 + 7016 0.67 0.905916
Target:  5'- cGAUGcCGGUcCACCAGaugauauugagGCCGGAUCCGa -3'
miRNA:   3'- -CUGC-GCCGcGUGGUUa----------CGGCUUAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.