miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1761 3' -56.3 NC_001347.2 + 47745 1.09 0.004187
Target:  5'- aGACGCGGCGCACCAAUGCCGAAUCCAa -3'
miRNA:   3'- -CUGCGCCGCGUGGUUACGGCUUAGGU- -5'
1761 3' -56.3 NC_001347.2 + 109565 0.79 0.310781
Target:  5'- cACGCGGC-CGCCuuaagGCCGAGUCCAc -3'
miRNA:   3'- cUGCGCCGcGUGGuua--CGGCUUAGGU- -5'
1761 3' -56.3 NC_001347.2 + 92368 0.75 0.529807
Target:  5'- gGACGCGGCaGCaACCAGgcGCCGGcgCCGc -3'
miRNA:   3'- -CUGCGCCG-CG-UGGUUa-CGGCUuaGGU- -5'
1761 3' -56.3 NC_001347.2 + 41693 0.74 0.572794
Target:  5'- aACGUGGCGCGugGAUGCCGGccgagacauuuacguGUCCAa -3'
miRNA:   3'- cUGCGCCGCGUggUUACGGCU---------------UAGGU- -5'
1761 3' -56.3 NC_001347.2 + 172067 0.74 0.578728
Target:  5'- aGCGCuGCGCGCCGAcaUGCuCGAGUUCGg -3'
miRNA:   3'- cUGCGcCGCGUGGUU--ACG-GCUUAGGU- -5'
1761 3' -56.3 NC_001347.2 + 87262 0.73 0.598592
Target:  5'- gGAUGCGGCGCGCCGuacCCGucUCCu -3'
miRNA:   3'- -CUGCGCCGCGUGGUuacGGCuuAGGu -5'
1761 3' -56.3 NC_001347.2 + 115631 0.73 0.608562
Target:  5'- aGACGUGGuCGCGCCGAUcGCUGuaggCCAa -3'
miRNA:   3'- -CUGCGCC-GCGUGGUUA-CGGCuua-GGU- -5'
1761 3' -56.3 NC_001347.2 + 96304 0.73 0.61855
Target:  5'- uGCGCGGCGCACaugaucaucuCGGUGCUGAG-CCu -3'
miRNA:   3'- cUGCGCCGCGUG----------GUUACGGCUUaGGu -5'
1761 3' -56.3 NC_001347.2 + 17104 0.73 0.638547
Target:  5'- aACGaCGGcCGCGCC-AUGCCGGucGUCCGc -3'
miRNA:   3'- cUGC-GCC-GCGUGGuUACGGCU--UAGGU- -5'
1761 3' -56.3 NC_001347.2 + 173554 0.72 0.668488
Target:  5'- gGugGCGGCaGCcucucuucgcugGCCAAUGCCGGcgGUCUg -3'
miRNA:   3'- -CugCGCCG-CG------------UGGUUACGGCU--UAGGu -5'
1761 3' -56.3 NC_001347.2 + 154289 0.72 0.687333
Target:  5'- uGGCGUGGUGCucaugacGCCGGUGCCGGc-CCAc -3'
miRNA:   3'- -CUGCGCCGCG-------UGGUUACGGCUuaGGU- -5'
1761 3' -56.3 NC_001347.2 + 89176 0.72 0.698174
Target:  5'- uGCGUGGUGaGCCGGUGCUGcGGUCCGu -3'
miRNA:   3'- cUGCGCCGCgUGGUUACGGC-UUAGGU- -5'
1761 3' -56.3 NC_001347.2 + 37933 0.71 0.717714
Target:  5'- aGCGCGGCGCGCgGGUGCaggugcagCGcGUCCc -3'
miRNA:   3'- cUGCGCCGCGUGgUUACG--------GCuUAGGu -5'
1761 3' -56.3 NC_001347.2 + 99143 0.71 0.746479
Target:  5'- -cCGCGGCGCGCguAcGCCGAGaCCc -3'
miRNA:   3'- cuGCGCCGCGUGguUaCGGCUUaGGu -5'
1761 3' -56.3 NC_001347.2 + 191671 0.71 0.746479
Target:  5'- uGGCGUGGCGCACgCAGcgaccguaguUGUCGcGGUCCGc -3'
miRNA:   3'- -CUGCGCCGCGUG-GUU----------ACGGC-UUAGGU- -5'
1761 3' -56.3 NC_001347.2 + 199035 0.71 0.746479
Target:  5'- aGACGUGGCGUACUg--GCCG--UCCGu -3'
miRNA:   3'- -CUGCGCCGCGUGGuuaCGGCuuAGGU- -5'
1761 3' -56.3 NC_001347.2 + 68233 0.71 0.755887
Target:  5'- aGACGCGGCGCcgcaACCAccGCC---UCCGc -3'
miRNA:   3'- -CUGCGCCGCG----UGGUuaCGGcuuAGGU- -5'
1761 3' -56.3 NC_001347.2 + 91594 0.7 0.791504
Target:  5'- uACGUGGCGCACCAaaagcacGUGUCGcAGUUUg -3'
miRNA:   3'- cUGCGCCGCGUGGU-------UACGGC-UUAGGu -5'
1761 3' -56.3 NC_001347.2 + 39100 0.7 0.792391
Target:  5'- uGCGCGGCGuCACCcgcGCguaGAAUCCGu -3'
miRNA:   3'- cUGCGCCGC-GUGGuuaCGg--CUUAGGU- -5'
1761 3' -56.3 NC_001347.2 + 171751 0.7 0.792391
Target:  5'- cGCGCuuGGaCGCGCUAAUGUCGGcGUCCGa -3'
miRNA:   3'- cUGCG--CC-GCGUGGUUACGGCU-UAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.