miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1761 3' -56.3 NC_001347.2 + 87351 0.67 0.899759
Target:  5'- aGCGCGGCGCGCaCGAucucgcugggguUGUgCGggUUCAc -3'
miRNA:   3'- cUGCGCCGCGUG-GUU------------ACG-GCuuAGGU- -5'
1761 3' -56.3 NC_001347.2 + 208100 0.68 0.893381
Target:  5'- aGAUG-GGCGCACCGAcgGCgGAG-CCGc -3'
miRNA:   3'- -CUGCgCCGCGUGGUUa-CGgCUUaGGU- -5'
1761 3' -56.3 NC_001347.2 + 193576 0.68 0.886784
Target:  5'- -cCGCuGCGaC-CCGGUGCaCGAAUCCAu -3'
miRNA:   3'- cuGCGcCGC-GuGGUUACG-GCUUAGGU- -5'
1761 3' -56.3 NC_001347.2 + 16067 0.68 0.879973
Target:  5'- cGGCcCGGCaGCACC-AUGCCGGAgCUAc -3'
miRNA:   3'- -CUGcGCCG-CGUGGuUACGGCUUaGGU- -5'
1761 3' -56.3 NC_001347.2 + 126700 0.68 0.879973
Target:  5'- uGACGCGGCGCccgaaGCgCAGUGCacgcgCGAA-CCGg -3'
miRNA:   3'- -CUGCGCCGCG-----UG-GUUACG-----GCUUaGGU- -5'
1761 3' -56.3 NC_001347.2 + 129507 0.68 0.872952
Target:  5'- aGCGCGGCGcCGCCuc-GUCGggUaCCu -3'
miRNA:   3'- cUGCGCCGC-GUGGuuaCGGCuuA-GGu -5'
1761 3' -56.3 NC_001347.2 + 195843 0.68 0.872952
Target:  5'- cGCGCuucgaGGCGUGCCcuUGCCGcccGAUCCGc -3'
miRNA:   3'- cUGCG-----CCGCGUGGuuACGGC---UUAGGU- -5'
1761 3' -56.3 NC_001347.2 + 47473 0.68 0.858295
Target:  5'- aGACGCGGCGaCGCCucuccacgGCCGAc---- -3'
miRNA:   3'- -CUGCGCCGC-GUGGuua-----CGGCUuaggu -5'
1761 3' -56.3 NC_001347.2 + 154826 0.69 0.842859
Target:  5'- --aGCGGCGCGCaCAGUcGCCGcaguuGUUCAa -3'
miRNA:   3'- cugCGCCGCGUG-GUUA-CGGCu----UAGGU- -5'
1761 3' -56.3 NC_001347.2 + 156806 0.69 0.834863
Target:  5'- cGGCaGCGGCGgGCCAGgacGUCGGaggGUCCGc -3'
miRNA:   3'- -CUG-CGCCGCgUGGUUa--CGGCU---UAGGU- -5'
1761 3' -56.3 NC_001347.2 + 100879 0.69 0.826692
Target:  5'- cGGCGCGGCGCAgCGccgGCCauucUCCGg -3'
miRNA:   3'- -CUGCGCCGCGUgGUua-CGGcuu-AGGU- -5'
1761 3' -56.3 NC_001347.2 + 172703 0.69 0.826692
Target:  5'- cGACGCuGGCGCugCg--GCUGAAgCCGu -3'
miRNA:   3'- -CUGCG-CCGCGugGuuaCGGCUUaGGU- -5'
1761 3' -56.3 NC_001347.2 + 2381 0.69 0.818351
Target:  5'- gGACGCgagucGGCGC-CCGccGCCGAggCCGc -3'
miRNA:   3'- -CUGCG-----CCGCGuGGUuaCGGCUuaGGU- -5'
1761 3' -56.3 NC_001347.2 + 150922 0.69 0.818351
Target:  5'- --aGCGGCGUGCCG-UGCgCGAAUgCAu -3'
miRNA:   3'- cugCGCCGCGUGGUuACG-GCUUAgGU- -5'
1761 3' -56.3 NC_001347.2 + 188864 0.69 0.809849
Target:  5'- uGGCGcCGGCGCuGCCAuccucacGCCGAcgCCu -3'
miRNA:   3'- -CUGC-GCCGCG-UGGUua-----CGGCUuaGGu -5'
1761 3' -56.3 NC_001347.2 + 139850 0.7 0.801193
Target:  5'- cGAUuCGGCuuACCAAccUGCCGAAUCUAu -3'
miRNA:   3'- -CUGcGCCGcgUGGUU--ACGGCUUAGGU- -5'
1761 3' -56.3 NC_001347.2 + 39100 0.7 0.792391
Target:  5'- uGCGCGGCGuCACCcgcGCguaGAAUCCGu -3'
miRNA:   3'- cUGCGCCGC-GUGGuuaCGg--CUUAGGU- -5'
1761 3' -56.3 NC_001347.2 + 171751 0.7 0.792391
Target:  5'- cGCGCuuGGaCGCGCUAAUGUCGGcGUCCGa -3'
miRNA:   3'- cUGCG--CC-GCGUGGUUACGGCU-UAGGU- -5'
1761 3' -56.3 NC_001347.2 + 91594 0.7 0.791504
Target:  5'- uACGUGGCGCACCAaaagcacGUGUCGcAGUUUg -3'
miRNA:   3'- cUGCGCCGCGUGGU-------UACGGC-UUAGGu -5'
1761 3' -56.3 NC_001347.2 + 68233 0.71 0.755887
Target:  5'- aGACGCGGCGCcgcaACCAccGCC---UCCGc -3'
miRNA:   3'- -CUGCGCCGCG----UGGUuaCGGcuuAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.