miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1761 3' -56.3 NC_001347.2 + 1209 0.66 0.938103
Target:  5'- cGCGCGGCGUuuuugGCCAAcagcacggGCCGcg-CCAu -3'
miRNA:   3'- cUGCGCCGCG-----UGGUUa-------CGGCuuaGGU- -5'
1761 3' -56.3 NC_001347.2 + 2381 0.69 0.818351
Target:  5'- gGACGCgagucGGCGC-CCGccGCCGAggCCGc -3'
miRNA:   3'- -CUGCG-----CCGCGuGGUuaCGGCUuaGGU- -5'
1761 3' -56.3 NC_001347.2 + 7016 0.67 0.905916
Target:  5'- cGAUGcCGGUcCACCAGaugauauugagGCCGGAUCCGa -3'
miRNA:   3'- -CUGC-GCCGcGUGGUUa----------CGGCUUAGGU- -5'
1761 3' -56.3 NC_001347.2 + 16067 0.68 0.879973
Target:  5'- cGGCcCGGCaGCACC-AUGCCGGAgCUAc -3'
miRNA:   3'- -CUGcGCCG-CGUGGuUACGGCUUaGGU- -5'
1761 3' -56.3 NC_001347.2 + 17104 0.73 0.638547
Target:  5'- aACGaCGGcCGCGCC-AUGCCGGucGUCCGc -3'
miRNA:   3'- cUGC-GCC-GCGUGGuUACGGCU--UAGGU- -5'
1761 3' -56.3 NC_001347.2 + 37933 0.71 0.717714
Target:  5'- aGCGCGGCGCGCgGGUGCaggugcagCGcGUCCc -3'
miRNA:   3'- cUGCGCCGCGUGgUUACG--------GCuUAGGu -5'
1761 3' -56.3 NC_001347.2 + 37967 0.67 0.923034
Target:  5'- aGCGCGGcCGCucCCAcUGCuCGcGGUCCAg -3'
miRNA:   3'- cUGCGCC-GCGu-GGUuACG-GC-UUAGGU- -5'
1761 3' -56.3 NC_001347.2 + 38807 0.66 0.927771
Target:  5'- --aGCGGUacagccGCACCAccucgcccgcgccGUGCCGAAaCCAc -3'
miRNA:   3'- cugCGCCG------CGUGGU-------------UACGGCUUaGGU- -5'
1761 3' -56.3 NC_001347.2 + 39100 0.7 0.792391
Target:  5'- uGCGCGGCGuCACCcgcGCguaGAAUCCGu -3'
miRNA:   3'- cUGCGCCGC-GUGGuuaCGg--CUUAGGU- -5'
1761 3' -56.3 NC_001347.2 + 39522 0.66 0.951135
Target:  5'- gGGCGCGGCGacauGCCGuugcGCUGGG-CCAu -3'
miRNA:   3'- -CUGCGCCGCg---UGGUua--CGGCUUaGGU- -5'
1761 3' -56.3 NC_001347.2 + 41693 0.74 0.572794
Target:  5'- aACGUGGCGCGugGAUGCCGGccgagacauuuacguGUCCAa -3'
miRNA:   3'- cUGCGCCGCGUggUUACGGCU---------------UAGGU- -5'
1761 3' -56.3 NC_001347.2 + 47473 0.68 0.858295
Target:  5'- aGACGCGGCGaCGCCucuccacgGCCGAc---- -3'
miRNA:   3'- -CUGCGCCGC-GUGGuua-----CGGCUuaggu -5'
1761 3' -56.3 NC_001347.2 + 47745 1.09 0.004187
Target:  5'- aGACGCGGCGCACCAAUGCCGAAUCCAa -3'
miRNA:   3'- -CUGCGCCGCGUGGUUACGGCUUAGGU- -5'
1761 3' -56.3 NC_001347.2 + 63759 0.66 0.947015
Target:  5'- cGAuCGCGGCGCcCCAcuUGCCgcuguacaacGAAUUCAc -3'
miRNA:   3'- -CU-GCGCCGCGuGGUu-ACGG----------CUUAGGU- -5'
1761 3' -56.3 NC_001347.2 + 68233 0.71 0.755887
Target:  5'- aGACGCGGCGCcgcaACCAccGCC---UCCGc -3'
miRNA:   3'- -CUGCGCCGCG----UGGUuaCGGcuuAGGU- -5'
1761 3' -56.3 NC_001347.2 + 73720 0.66 0.942672
Target:  5'- -cCGCGG-GCACCGccGCCGGAggcgcgguUCCc -3'
miRNA:   3'- cuGCGCCgCGUGGUuaCGGCUU--------AGGu -5'
1761 3' -56.3 NC_001347.2 + 81495 0.66 0.947015
Target:  5'- cGGCGgGuGCGCACCGccgGUGCUGcugcugacuUCCAc -3'
miRNA:   3'- -CUGCgC-CGCGUGGU---UACGGCuu-------AGGU- -5'
1761 3' -56.3 NC_001347.2 + 83898 0.67 0.917555
Target:  5'- gGACGCGGUaGCGgCAGUGUCaAGUaCCAg -3'
miRNA:   3'- -CUGCGCCG-CGUgGUUACGGcUUA-GGU- -5'
1761 3' -56.3 NC_001347.2 + 87262 0.73 0.598592
Target:  5'- gGAUGCGGCGCGCCGuacCCGucUCCu -3'
miRNA:   3'- -CUGCGCCGCGUGGUuacGGCuuAGGu -5'
1761 3' -56.3 NC_001347.2 + 87351 0.67 0.899759
Target:  5'- aGCGCGGCGCGCaCGAucucgcugggguUGUgCGggUUCAc -3'
miRNA:   3'- cUGCGCCGCGUG-GUU------------ACG-GCuuAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.