miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1761 3' -56.3 NC_001347.2 + 88381 0.67 0.915867
Target:  5'- cGACGUGGacgGCACUAcggGCCGAcgcagguucuccuuGUCCGa -3'
miRNA:   3'- -CUGCGCCg--CGUGGUua-CGGCU--------------UAGGU- -5'
1761 3' -56.3 NC_001347.2 + 88679 0.66 0.951135
Target:  5'- uGGCGcCGGCGCGCCc-UGCUGGGa--- -3'
miRNA:   3'- -CUGC-GCCGCGUGGuuACGGCUUaggu -5'
1761 3' -56.3 NC_001347.2 + 89176 0.72 0.698174
Target:  5'- uGCGUGGUGaGCCGGUGCUGcGGUCCGu -3'
miRNA:   3'- cUGCGCCGCgUGGUUACGGC-UUAGGU- -5'
1761 3' -56.3 NC_001347.2 + 91594 0.7 0.791504
Target:  5'- uACGUGGCGCACCAaaagcacGUGUCGcAGUUUg -3'
miRNA:   3'- cUGCGCCGCGUGGU-------UACGGC-UUAGGu -5'
1761 3' -56.3 NC_001347.2 + 92368 0.75 0.529807
Target:  5'- gGACGCGGCaGCaACCAGgcGCCGGcgCCGc -3'
miRNA:   3'- -CUGCGCCG-CG-UGGUUa-CGGCUuaGGU- -5'
1761 3' -56.3 NC_001347.2 + 93572 0.67 0.917555
Target:  5'- cACGgaGGCGCACgCGAUGCUGcacAUCCc -3'
miRNA:   3'- cUGCg-CCGCGUG-GUUACGGCu--UAGGu -5'
1761 3' -56.3 NC_001347.2 + 96304 0.73 0.61855
Target:  5'- uGCGCGGCGCACaugaucaucuCGGUGCUGAG-CCu -3'
miRNA:   3'- cUGCGCCGCGUG----------GUUACGGCUUaGGu -5'
1761 3' -56.3 NC_001347.2 + 99143 0.71 0.746479
Target:  5'- -cCGCGGCGCGCguAcGCCGAGaCCc -3'
miRNA:   3'- cuGCGCCGCGUGguUaCGGCUUaGGu -5'
1761 3' -56.3 NC_001347.2 + 100879 0.69 0.826692
Target:  5'- cGGCGCGGCGCAgCGccgGCCauucUCCGg -3'
miRNA:   3'- -CUGCGCCGCGUgGUua-CGGcuu-AGGU- -5'
1761 3' -56.3 NC_001347.2 + 109565 0.79 0.310781
Target:  5'- cACGCGGC-CGCCuuaagGCCGAGUCCAc -3'
miRNA:   3'- cUGCGCCGcGUGGuua--CGGCUUAGGU- -5'
1761 3' -56.3 NC_001347.2 + 115631 0.73 0.608562
Target:  5'- aGACGUGGuCGCGCCGAUcGCUGuaggCCAa -3'
miRNA:   3'- -CUGCGCC-GCGUGGUUA-CGGCuua-GGU- -5'
1761 3' -56.3 NC_001347.2 + 126700 0.68 0.879973
Target:  5'- uGACGCGGCGCccgaaGCgCAGUGCacgcgCGAA-CCGg -3'
miRNA:   3'- -CUGCGCCGCG-----UG-GUUACG-----GCUUaGGU- -5'
1761 3' -56.3 NC_001347.2 + 129507 0.68 0.872952
Target:  5'- aGCGCGGCGcCGCCuc-GUCGggUaCCu -3'
miRNA:   3'- cUGCGCCGC-GUGGuuaCGGCuuA-GGu -5'
1761 3' -56.3 NC_001347.2 + 138901 0.66 0.947015
Target:  5'- aGugGCGGCGUAgCCAuUGUCu--UCCGu -3'
miRNA:   3'- -CugCGCCGCGU-GGUuACGGcuuAGGU- -5'
1761 3' -56.3 NC_001347.2 + 139850 0.7 0.801193
Target:  5'- cGAUuCGGCuuACCAAccUGCCGAAUCUAu -3'
miRNA:   3'- -CUGcGCCGcgUGGUU--ACGGCUUAGGU- -5'
1761 3' -56.3 NC_001347.2 + 149448 0.66 0.947015
Target:  5'- cGugGCcGCGCuAUCGAUGCCu-GUCCu -3'
miRNA:   3'- -CugCGcCGCG-UGGUUACGGcuUAGGu -5'
1761 3' -56.3 NC_001347.2 + 150922 0.69 0.818351
Target:  5'- --aGCGGCGUGCCG-UGCgCGAAUgCAu -3'
miRNA:   3'- cugCGCCGCGUGGUuACG-GCUUAgGU- -5'
1761 3' -56.3 NC_001347.2 + 154289 0.72 0.687333
Target:  5'- uGGCGUGGUGCucaugacGCCGGUGCCGGc-CCAc -3'
miRNA:   3'- -CUGCGCCGCG-------UGGUUACGGCUuaGGU- -5'
1761 3' -56.3 NC_001347.2 + 154826 0.69 0.842859
Target:  5'- --aGCGGCGCGCaCAGUcGCCGcaguuGUUCAa -3'
miRNA:   3'- cugCGCCGCGUG-GUUA-CGGCu----UAGGU- -5'
1761 3' -56.3 NC_001347.2 + 155980 0.67 0.917555
Target:  5'- cACGCGGCGUAUCcucaaGuuGggUCCc -3'
miRNA:   3'- cUGCGCCGCGUGGuua--CggCuuAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.