miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1761 5' -62.6 NC_001347.2 + 96186 0.66 0.75014
Target:  5'- --gGCCUCgGGcacgggcgUGGcGGCCGuaGGCg -3'
miRNA:   3'- gcaCGGAGgCCa-------ACCaCCGGCcgCCG- -5'
1761 5' -62.6 NC_001347.2 + 225882 0.66 0.75014
Target:  5'- cCGUuCCUCguaggcUGGUccUGGggaacgGGUCGGCGGCc -3'
miRNA:   3'- -GCAcGGAG------GCCA--ACCa-----CCGGCCGCCG- -5'
1761 5' -62.6 NC_001347.2 + 1928 0.66 0.75014
Target:  5'- gGUGCUgcccgCgCGG-UGGcugGGCUGcGCGGCg -3'
miRNA:   3'- gCACGGa----G-GCCaACCa--CCGGC-CGCCG- -5'
1761 5' -62.6 NC_001347.2 + 222102 0.66 0.741173
Target:  5'- -aUGCCgCCGGccaccaaccGGaGGCaCGGCGGCu -3'
miRNA:   3'- gcACGGaGGCCaa-------CCaCCG-GCCGCCG- -5'
1761 5' -62.6 NC_001347.2 + 13996 0.66 0.723
Target:  5'- aCGUcUCUCCGGUaacuaucGGcGGCCGG-GGCu -3'
miRNA:   3'- -GCAcGGAGGCCAa------CCaCCGGCCgCCG- -5'
1761 5' -62.6 NC_001347.2 + 7955 0.66 0.71381
Target:  5'- gGUGCgaCUGac-GGUGG-CGGCGGCa -3'
miRNA:   3'- gCACGgaGGCcaaCCACCgGCCGCCG- -5'
1761 5' -62.6 NC_001347.2 + 2083 0.67 0.695258
Target:  5'- uGUGCCUCCGcagccguacGGcgccGCCGGCGGg -3'
miRNA:   3'- gCACGGAGGCcaa------CCac--CGGCCGCCg -5'
1761 5' -62.6 NC_001347.2 + 173706 0.67 0.694325
Target:  5'- gGUGgUUCCGGUacgcggaaaaUgagcagcGGUGG-CGGCGGCg -3'
miRNA:   3'- gCACgGAGGCCA----------A-------CCACCgGCCGCCG- -5'
1761 5' -62.6 NC_001347.2 + 139310 0.67 0.68591
Target:  5'- gCGUGCCUaCCGaucUGGcGGCguugugcgCGGCGGUg -3'
miRNA:   3'- -GCACGGA-GGCca-ACCaCCG--------GCCGCCG- -5'
1761 5' -62.6 NC_001347.2 + 192179 0.67 0.667108
Target:  5'- --cGUCUCCGGaUGaGcGGCCG-CGGCg -3'
miRNA:   3'- gcaCGGAGGCCaAC-CaCCGGCcGCCG- -5'
1761 5' -62.6 NC_001347.2 + 30606 0.67 0.667108
Target:  5'- -cUGCggCCGGccgcGGU-GCCGGCGGCu -3'
miRNA:   3'- gcACGgaGGCCaa--CCAcCGGCCGCCG- -5'
1761 5' -62.6 NC_001347.2 + 152384 0.67 0.657666
Target:  5'- gCGUcGCCUgcgaCGGcgGGUGGagaugaGGCGGCg -3'
miRNA:   3'- -GCA-CGGAg---GCCaaCCACCgg----CCGCCG- -5'
1761 5' -62.6 NC_001347.2 + 2127 0.67 0.657666
Target:  5'- gCGUGCCUaacgCGGacgcgcacgcGGUGGUCGG-GGCg -3'
miRNA:   3'- -GCACGGAg---GCCaa--------CCACCGGCCgCCG- -5'
1761 5' -62.6 NC_001347.2 + 77054 0.68 0.648208
Target:  5'- gCGUGCCgCCGGccucGGacgaagcGGCagCGGCGGCa -3'
miRNA:   3'- -GCACGGaGGCCaa--CCa------CCG--GCCGCCG- -5'
1761 5' -62.6 NC_001347.2 + 173648 0.68 0.600878
Target:  5'- uCG-GCgUCUGGgaggaGGUGGCggCGGUGGCg -3'
miRNA:   3'- -GCaCGgAGGCCaa---CCACCG--GCCGCCG- -5'
1761 5' -62.6 NC_001347.2 + 101241 0.69 0.591448
Target:  5'- aCGUGCaggugCCGcGU--GUGGCCaGCGGCg -3'
miRNA:   3'- -GCACGga---GGC-CAacCACCGGcCGCCG- -5'
1761 5' -62.6 NC_001347.2 + 82709 0.69 0.591448
Target:  5'- gGUGUa--CGGgUGGUGGCgguggugcagCGGCGGCu -3'
miRNA:   3'- gCACGgagGCCaACCACCG----------GCCGCCG- -5'
1761 5' -62.6 NC_001347.2 + 29706 0.69 0.585801
Target:  5'- --aGCCUCCGGaacccucuggcgaucUgccuguugUGGUGGCUgggagugguGGCGGCa -3'
miRNA:   3'- gcaCGGAGGCC---------------A--------ACCACCGG---------CCGCCG- -5'
1761 5' -62.6 NC_001347.2 + 147893 0.69 0.582043
Target:  5'- gCGUaGCCaUUgGGgccgugGGUGGCgCGGUGGCc -3'
miRNA:   3'- -GCA-CGG-AGgCCaa----CCACCG-GCCGCCG- -5'
1761 5' -62.6 NC_001347.2 + 189752 0.69 0.563331
Target:  5'- aGUGCCcccccgucUCCGGUgaaaGGCCGG-GGCa -3'
miRNA:   3'- gCACGG--------AGGCCAaccaCCGGCCgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.