miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1761 5' -62.6 NC_001347.2 + 47779 1.11 0.000923
Target:  5'- cCGUGCCUCCGGUUGGUGGCCGGCGGCa -3'
miRNA:   3'- -GCACGGAGGCCAACCACCGGCCGCCG- -5'
1761 5' -62.6 NC_001347.2 + 182221 0.76 0.250419
Target:  5'- gCGUcGCCUUCGGUgacgucggUGGUGGCUGuaGGCu -3'
miRNA:   3'- -GCA-CGGAGGCCA--------ACCACCGGCcgCCG- -5'
1761 5' -62.6 NC_001347.2 + 229674 0.74 0.298257
Target:  5'- uGUGCCggCGGggugUGGUGGCgggguguguCGGCGGUg -3'
miRNA:   3'- gCACGGagGCCa---ACCACCG---------GCCGCCG- -5'
1761 5' -62.6 NC_001347.2 + 195 0.74 0.298257
Target:  5'- uGUGCCggCGGggugUGGUGGCgggguguguCGGCGGUg -3'
miRNA:   3'- gCACGGagGCCa---ACCACCG---------GCCGCCG- -5'
1761 5' -62.6 NC_001347.2 + 112630 0.73 0.344252
Target:  5'- uCGcGCCgacgguaauaggCCGGUgaUGGUGG-CGGCGGCa -3'
miRNA:   3'- -GCaCGGa-----------GGCCA--ACCACCgGCCGCCG- -5'
1761 5' -62.6 NC_001347.2 + 66779 0.72 0.382731
Target:  5'- aCGUccGCCcgaCGG-UGGUGGCggCGGCGGCa -3'
miRNA:   3'- -GCA--CGGag-GCCaACCACCG--GCCGCCG- -5'
1761 5' -62.6 NC_001347.2 + 148606 0.72 0.406194
Target:  5'- gCGUGaCCggCGGUgcggucgcgGGUGGCCGGCGucaGCg -3'
miRNA:   3'- -GCAC-GGagGCCAa--------CCACCGGCCGC---CG- -5'
1761 5' -62.6 NC_001347.2 + 78344 0.71 0.464293
Target:  5'- gCGUGguCCgggcggacCCGGcgUGGUGGgacCCGGCGGCg -3'
miRNA:   3'- -GCAC--GGa-------GGCCa-ACCACC---GGCCGCCG- -5'
1761 5' -62.6 NC_001347.2 + 2665 0.7 0.490489
Target:  5'- --gGCCa-CGGUgguuaUGGaGGCCGGCGGCc -3'
miRNA:   3'- gcaCGGagGCCA-----ACCaCCGGCCGCCG- -5'
1761 5' -62.6 NC_001347.2 + 189752 0.69 0.563331
Target:  5'- aGUGCCcccccgucUCCGGUgaaaGGCCGG-GGCa -3'
miRNA:   3'- gCACGG--------AGGCCAaccaCCGGCCgCCG- -5'
1761 5' -62.6 NC_001347.2 + 147893 0.69 0.582043
Target:  5'- gCGUaGCCaUUgGGgccgugGGUGGCgCGGUGGCc -3'
miRNA:   3'- -GCA-CGG-AGgCCaa----CCACCG-GCCGCCG- -5'
1761 5' -62.6 NC_001347.2 + 29706 0.69 0.585801
Target:  5'- --aGCCUCCGGaacccucuggcgaucUgccuguugUGGUGGCUgggagugguGGCGGCa -3'
miRNA:   3'- gcaCGGAGGCC---------------A--------ACCACCGG---------CCGCCG- -5'
1761 5' -62.6 NC_001347.2 + 101241 0.69 0.591448
Target:  5'- aCGUGCaggugCCGcGU--GUGGCCaGCGGCg -3'
miRNA:   3'- -GCACGga---GGC-CAacCACCGGcCGCCG- -5'
1761 5' -62.6 NC_001347.2 + 82709 0.69 0.591448
Target:  5'- gGUGUa--CGGgUGGUGGCgguggugcagCGGCGGCu -3'
miRNA:   3'- gCACGgagGCCaACCACCG----------GCCGCCG- -5'
1761 5' -62.6 NC_001347.2 + 173648 0.68 0.600878
Target:  5'- uCG-GCgUCUGGgaggaGGUGGCggCGGUGGCg -3'
miRNA:   3'- -GCaCGgAGGCCaa---CCACCG--GCCGCCG- -5'
1761 5' -62.6 NC_001347.2 + 77054 0.68 0.648208
Target:  5'- gCGUGCCgCCGGccucGGacgaagcGGCagCGGCGGCa -3'
miRNA:   3'- -GCACGGaGGCCaa--CCa------CCG--GCCGCCG- -5'
1761 5' -62.6 NC_001347.2 + 2127 0.67 0.657666
Target:  5'- gCGUGCCUaacgCGGacgcgcacgcGGUGGUCGG-GGCg -3'
miRNA:   3'- -GCACGGAg---GCCaa--------CCACCGGCCgCCG- -5'
1761 5' -62.6 NC_001347.2 + 152384 0.67 0.657666
Target:  5'- gCGUcGCCUgcgaCGGcgGGUGGagaugaGGCGGCg -3'
miRNA:   3'- -GCA-CGGAg---GCCaaCCACCgg----CCGCCG- -5'
1761 5' -62.6 NC_001347.2 + 30606 0.67 0.667108
Target:  5'- -cUGCggCCGGccgcGGU-GCCGGCGGCu -3'
miRNA:   3'- gcACGgaGGCCaa--CCAcCGGCCGCCG- -5'
1761 5' -62.6 NC_001347.2 + 192179 0.67 0.667108
Target:  5'- --cGUCUCCGGaUGaGcGGCCG-CGGCg -3'
miRNA:   3'- gcaCGGAGGCCaAC-CaCCGGCcGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.