Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 1761 | 5' | -62.6 | NC_001347.2 | + | 30606 | 0.67 | 0.667108 |
|
Target: 5'- -cUGCggCCGGccgcGGU-GCCGGCGGCu -3' miRNA: 3'- gcACGgaGGCCaa--CCAcCGGCCGCCG- -5' |
|||||||
| 1761 | 5' | -62.6 | NC_001347.2 | + | 29706 | 0.69 | 0.585801 |
|
Target: 5'- --aGCCUCCGGaacccucuggcgaucUgccuguugUGGUGGCUgggagugguGGCGGCa -3' miRNA: 3'- gcaCGGAGGCC---------------A--------ACCACCGG---------CCGCCG- -5' |
|||||||
| 1761 | 5' | -62.6 | NC_001347.2 | + | 13996 | 0.66 | 0.723 |
|
Target: 5'- aCGUcUCUCCGGUaacuaucGGcGGCCGG-GGCu -3' miRNA: 3'- -GCAcGGAGGCCAa------CCaCCGGCCgCCG- -5' |
|||||||
| 1761 | 5' | -62.6 | NC_001347.2 | + | 7955 | 0.66 | 0.71381 |
|
Target: 5'- gGUGCgaCUGac-GGUGG-CGGCGGCa -3' miRNA: 3'- gCACGgaGGCcaaCCACCgGCCGCCG- -5' |
|||||||
| 1761 | 5' | -62.6 | NC_001347.2 | + | 2665 | 0.7 | 0.490489 |
|
Target: 5'- --gGCCa-CGGUgguuaUGGaGGCCGGCGGCc -3' miRNA: 3'- gcaCGGagGCCA-----ACCaCCGGCCGCCG- -5' |
|||||||
| 1761 | 5' | -62.6 | NC_001347.2 | + | 2127 | 0.67 | 0.657666 |
|
Target: 5'- gCGUGCCUaacgCGGacgcgcacgcGGUGGUCGG-GGCg -3' miRNA: 3'- -GCACGGAg---GCCaa--------CCACCGGCCgCCG- -5' |
|||||||
| 1761 | 5' | -62.6 | NC_001347.2 | + | 2083 | 0.67 | 0.695258 |
|
Target: 5'- uGUGCCUCCGcagccguacGGcgccGCCGGCGGg -3' miRNA: 3'- gCACGGAGGCcaa------CCac--CGGCCGCCg -5' |
|||||||
| 1761 | 5' | -62.6 | NC_001347.2 | + | 1928 | 0.66 | 0.75014 |
|
Target: 5'- gGUGCUgcccgCgCGG-UGGcugGGCUGcGCGGCg -3' miRNA: 3'- gCACGGa----G-GCCaACCa--CCGGC-CGCCG- -5' |
|||||||
| 1761 | 5' | -62.6 | NC_001347.2 | + | 195 | 0.74 | 0.298257 |
|
Target: 5'- uGUGCCggCGGggugUGGUGGCgggguguguCGGCGGUg -3' miRNA: 3'- gCACGGagGCCa---ACCACCG---------GCCGCCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home