miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17612 5' -52.2 NC_004466.2 + 2749 0.66 0.79985
Target:  5'- -uUAGuCCAUGcu-GUACCCAGcUGGAa -3'
miRNA:   3'- uuAUC-GGUGCauuCAUGGGUCcACCU- -5'
17612 5' -52.2 NC_004466.2 + 9952 0.66 0.779223
Target:  5'- --aGGCCACGgagAAGcucACCCAagcGGUGGc -3'
miRNA:   3'- uuaUCGGUGCa--UUCa--UGGGU---CCACCu -5'
17612 5' -52.2 NC_004466.2 + 14177 0.67 0.733838
Target:  5'- uGGUGGCCuCGguucugcccuuGGUGCCCuGGGUGGu -3'
miRNA:   3'- -UUAUCGGuGCau---------UCAUGGG-UCCACCu -5'
17612 5' -52.2 NC_004466.2 + 32847 0.67 0.724937
Target:  5'- cAAUGGCCAU---AGUGgCCAGG-GGAu -3'
miRNA:   3'- -UUAUCGGUGcauUCAUgGGUCCaCCU- -5'
17612 5' -52.2 NC_004466.2 + 20768 0.69 0.621868
Target:  5'- gGAUAGCCACGag---GCCCuuGUGGAu -3'
miRNA:   3'- -UUAUCGGUGCauucaUGGGucCACCU- -5'
17612 5' -52.2 NC_004466.2 + 33153 0.72 0.434312
Target:  5'- uGUAGCCcuuCGUAA-UGCCCuGGGUGGAc -3'
miRNA:   3'- uUAUCGGu--GCAUUcAUGGG-UCCACCU- -5'
17612 5' -52.2 NC_004466.2 + 35517 0.74 0.340289
Target:  5'- uGUAGUC-CGgaggGAGU-CCCAGGUGGAa -3'
miRNA:   3'- uUAUCGGuGCa---UUCAuGGGUCCACCU- -5'
17612 5' -52.2 NC_004466.2 + 20022 1.07 0.001858
Target:  5'- uAAUAGCCACGUAAGUACCCAGGUGGAa -3'
miRNA:   3'- -UUAUCGGUGCAUUCAUGGGUCCACCU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.