miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17613 3' -44.6 NC_004466.2 + 9946 0.66 0.996678
Target:  5'- gGAACCUAccgucacuACCGAGGAAAcuaccAGGGCacugacgaugcugCCCAa -3'
miRNA:   3'- -CUUGGAU--------UGGUUUUUUU-----UUCCG-------------GGGU- -5'
17613 3' -44.6 NC_004466.2 + 15077 0.66 0.996069
Target:  5'- aGugCUAACCAAu-----GGGCCCa- -3'
miRNA:   3'- cUugGAUUGGUUuuuuuuUCCGGGgu -5'
17613 3' -44.6 NC_004466.2 + 26837 0.66 0.995615
Target:  5'- -cGCCgcgacauaggugagAACgAAAGGGuAAGGCCCCAc -3'
miRNA:   3'- cuUGGa-------------UUGgUUUUUUuUUCCGGGGU- -5'
17613 3' -44.6 NC_004466.2 + 32384 0.66 0.995289
Target:  5'- cGGGCCUGGaCGAAGGAGGuAGcGCCCUg -3'
miRNA:   3'- -CUUGGAUUgGUUUUUUUU-UC-CGGGGu -5'
17613 3' -44.6 NC_004466.2 + 33415 0.66 0.995289
Target:  5'- uGAACgaAGCCAAuccggguGAAGAAuuccuggugccGGCCCCGa -3'
miRNA:   3'- -CUUGgaUUGGUUu------UUUUUU-----------CCGGGGU- -5'
17613 3' -44.6 NC_004466.2 + 25703 0.66 0.995204
Target:  5'- --uCCUGACCAGcGAcaacaagccguauGAu-GGCCCCAa -3'
miRNA:   3'- cuuGGAUUGGUUuUU-------------UUuuCCGGGGU- -5'
17613 3' -44.6 NC_004466.2 + 24158 0.67 0.994387
Target:  5'- cGGACaCUcguCCAAGGcccucguuacGAAAGGGUCCCAa -3'
miRNA:   3'- -CUUG-GAuu-GGUUUU----------UUUUUCCGGGGU- -5'
17613 3' -44.6 NC_004466.2 + 29001 0.67 0.994387
Target:  5'- --uCCUAGauccUCAGGGGcccGAAGGCCCCAc -3'
miRNA:   3'- cuuGGAUU----GGUUUUUu--UUUCCGGGGU- -5'
17613 3' -44.6 NC_004466.2 + 38208 0.67 0.99335
Target:  5'- cGAACCU-GCUAcAGAAAcuGGaCCCCGu -3'
miRNA:   3'- -CUUGGAuUGGUuUUUUUuuCC-GGGGU- -5'
17613 3' -44.6 NC_004466.2 + 635 0.67 0.990819
Target:  5'- -uGCC-AACCAAGGAAGAGcGCCCa- -3'
miRNA:   3'- cuUGGaUUGGUUUUUUUUUcCGGGgu -5'
17613 3' -44.6 NC_004466.2 + 19977 0.67 0.989297
Target:  5'- gGAACUcacuACCGAAGGcaguaccgcAAGGGGCCUCAa -3'
miRNA:   3'- -CUUGGau--UGGUUUUU---------UUUUCCGGGGU- -5'
17613 3' -44.6 NC_004466.2 + 13713 0.68 0.987585
Target:  5'- -cACCUGAgcuacCCAGGAGAgacugGAGGGCUCCc -3'
miRNA:   3'- cuUGGAUU-----GGUUUUUU-----UUUCCGGGGu -5'
17613 3' -44.6 NC_004466.2 + 41733 0.68 0.98567
Target:  5'- cAACaUGACCcGucAGGAAGGCCCCc -3'
miRNA:   3'- cUUGgAUUGGuUuuUUUUUCCGGGGu -5'
17613 3' -44.6 NC_004466.2 + 5141 0.68 0.981169
Target:  5'- uGAGgCUAACCGuGAGGuauGGGCCUCu -3'
miRNA:   3'- -CUUgGAUUGGUuUUUUuu-UCCGGGGu -5'
17613 3' -44.6 NC_004466.2 + 3105 0.69 0.978557
Target:  5'- uGACa-GGCCAugau-GAAGGCCCCGg -3'
miRNA:   3'- cUUGgaUUGGUuuuuuUUUCCGGGGU- -5'
17613 3' -44.6 NC_004466.2 + 707 0.69 0.975686
Target:  5'- gGAACCUGGCCu--AAu---GGCCaCCAc -3'
miRNA:   3'- -CUUGGAUUGGuuuUUuuuuCCGG-GGU- -5'
17613 3' -44.6 NC_004466.2 + 3376 0.69 0.975686
Target:  5'- -cAUCUGGCUuGAcGAGGAGuGCCCCAa -3'
miRNA:   3'- cuUGGAUUGGuUUuUUUUUC-CGGGGU- -5'
17613 3' -44.6 NC_004466.2 + 272 0.69 0.9654
Target:  5'- uGGCCUuguACCAu---AGAAGGCCCg- -3'
miRNA:   3'- cUUGGAu--UGGUuuuuUUUUCCGGGgu -5'
17613 3' -44.6 NC_004466.2 + 20820 0.71 0.936426
Target:  5'- cGGGgCUAACCu-----AAAGGCCCCu -3'
miRNA:   3'- -CUUgGAUUGGuuuuuuUUUCCGGGGu -5'
17613 3' -44.6 NC_004466.2 + 2885 0.71 0.924096
Target:  5'- aGAugCUcGCCAAAGGGcucguuGGAGGUCCCu -3'
miRNA:   3'- -CUugGAuUGGUUUUUU------UUUCCGGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.