Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 17613 | 5' | -56 | NC_004466.2 | + | 10944 | 0.66 | 0.645942 |
|
Target: 5'- aUCCAagauAGGGGCCUgggcaguaucaaagaUGGGggaaUGGCCCa- -3' miRNA: 3'- -GGGU----UCCCCGGAa--------------AUCCa---AUCGGGgc -5' |
|||||||
| 17613 | 5' | -56 | NC_004466.2 | + | 20850 | 0.69 | 0.451988 |
|
Target: 5'- aCCCuuGGGGCCUUUuuuuuuGGUUAGgUUCa -3' miRNA: 3'- -GGGuuCCCCGGAAAu-----CCAAUCgGGGc -5' |
|||||||
| 17613 | 5' | -56 | NC_004466.2 | + | 8635 | 0.69 | 0.422716 |
|
Target: 5'- gCCCAgcuguaaucuagAGGGGCCcUUcGG--GGCCCCa -3' miRNA: 3'- -GGGU------------UCCCCGGaAAuCCaaUCGGGGc -5' |
|||||||
| 17613 | 5' | -56 | NC_004466.2 | + | 45309 | 0.7 | 0.403845 |
|
Target: 5'- aCCCAAagccuuGGCCUUgcGGUUGGCCuuGc -3' miRNA: 3'- -GGGUUcc----CCGGAAauCCAAUCGGggC- -5' |
|||||||
| 17613 | 5' | -56 | NC_004466.2 | + | 1081 | 0.7 | 0.394611 |
|
Target: 5'- cCCCAgauaaaguggGGGuGGCCUauccccagGGGUaUAGCCCCu -3' miRNA: 3'- -GGGU----------UCC-CCGGAaa------UCCA-AUCGGGGc -5' |
|||||||
| 17613 | 5' | -56 | NC_004466.2 | + | 20890 | 1.11 | 0.000502 |
|
Target: 5'- uCCCAAGGGGCCUUUAGGUUAGCCCCGa -3' miRNA: 3'- -GGGUUCCCCGGAAAUCCAAUCGGGGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home