miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17614 3' -43.9 NC_004466.2 + 1199 0.66 0.998939
Target:  5'- uCCAguAAUAUACCAAcAGGUAucgGGGGUu -3'
miRNA:   3'- -GGUacUUAUGUGGUU-UCUAU---UCCCAu -5'
17614 3' -43.9 NC_004466.2 + 143 0.66 0.998673
Target:  5'- -gGUaGAUACGgCGAAGGUAGGGGc- -3'
miRNA:   3'- ggUAcUUAUGUgGUUUCUAUUCCCau -5'
17614 3' -43.9 NC_004466.2 + 43149 0.67 0.997515
Target:  5'- aCCAUGAuggGCcuGCCAAAgGAUAAGGu-- -3'
miRNA:   3'- -GGUACUua-UG--UGGUUU-CUAUUCCcau -5'
17614 3' -43.9 NC_004466.2 + 27107 0.67 0.997515
Target:  5'- uCCAUGGAUACcguCCAGGGGgaucuuGGUAa -3'
miRNA:   3'- -GGUACUUAUGu--GGUUUCUauuc--CCAU- -5'
17614 3' -43.9 NC_004466.2 + 41840 0.67 0.996978
Target:  5'- uCCAUGuAUcCGCCAAGGuguGGGGa- -3'
miRNA:   3'- -GGUACuUAuGUGGUUUCuauUCCCau -5'
17614 3' -43.9 NC_004466.2 + 26246 0.68 0.994765
Target:  5'- uUCAUGAcaauaGCACCAGcagcuuGGAgGAGGGUGu -3'
miRNA:   3'- -GGUACUua---UGUGGUU------UCUaUUCCCAU- -5'
17614 3' -43.9 NC_004466.2 + 31882 0.68 0.993681
Target:  5'- aCCGUGAuauccccaaccugAUGaaaACCGAuGAUGAGGGg- -3'
miRNA:   3'- -GGUACU-------------UAUg--UGGUUuCUAUUCCCau -5'
17614 3' -43.9 NC_004466.2 + 13598 0.68 0.99139
Target:  5'- uCCAauUGggUgGCAUCGAAGGguuGGGUAa -3'
miRNA:   3'- -GGU--ACuuA-UGUGGUUUCUauuCCCAU- -5'
17614 3' -43.9 NC_004466.2 + 34770 0.69 0.987247
Target:  5'- aCCGUGGAUGC-CUggGGuaucgaucugcugGAGGGUAa -3'
miRNA:   3'- -GGUACUUAUGuGGuuUCua-----------UUCCCAU- -5'
17614 3' -43.9 NC_004466.2 + 1056 0.69 0.986493
Target:  5'- cCCA--GAUACACCGgAGGAUAaaauagacuuuuGGGGUAu -3'
miRNA:   3'- -GGUacUUAUGUGGU-UUCUAU------------UCCCAU- -5'
17614 3' -43.9 NC_004466.2 + 19889 0.7 0.979693
Target:  5'- aCCA-GAAgucuCACCAGGGGcaccgaUGAGGGUGu -3'
miRNA:   3'- -GGUaCUUau--GUGGUUUCU------AUUCCCAU- -5'
17614 3' -43.9 NC_004466.2 + 25511 0.7 0.979693
Target:  5'- cUCGUGGagacGUACACCAcGGAgacgGAGGGc- -3'
miRNA:   3'- -GGUACU----UAUGUGGUuUCUa---UUCCCau -5'
17614 3' -43.9 NC_004466.2 + 42689 0.71 0.967045
Target:  5'- aUCAUGGccuuCGCCGAAGAU-AGGGUc -3'
miRNA:   3'- -GGUACUuau-GUGGUUUCUAuUCCCAu -5'
17614 3' -43.9 NC_004466.2 + 4973 0.76 0.789862
Target:  5'- aCCGUGAgaaGUACACCGAAGugaucuccgacucuUGGGGGUu -3'
miRNA:   3'- -GGUACU---UAUGUGGUUUCu-------------AUUCCCAu -5'
17614 3' -43.9 NC_004466.2 + 23374 1.11 0.009267
Target:  5'- gCCAUGAAUACACCAAAGAUAAGGGUAa -3'
miRNA:   3'- -GGUACUUAUGUGGUUUCUAUUCCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.