Results 1 - 5 of 5 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17615 | 3' | -52.3 | NC_004466.2 | + | 16548 | 0.66 | 0.82961 |
Target: 5'- cCUCcgGGGUUACUUCcuggGGAGCUaCCu -3' miRNA: 3'- -GAGa-CCCGAUGAGGcuuaCUUCGA-GG- -5' |
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17615 | 3' | -52.3 | NC_004466.2 | + | 7396 | 0.66 | 0.800593 |
Target: 5'- aUCgauuGGCUACUCCGAggAUGAAa-UCCg -3' miRNA: 3'- gAGac--CCGAUGAGGCU--UACUUcgAGG- -5' |
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17615 | 3' | -52.3 | NC_004466.2 | + | 14296 | 0.66 | 0.800593 |
Target: 5'- gCUCcugcgGGGC--CUCCGAA-GAGuGCUCCc -3' miRNA: 3'- -GAGa----CCCGauGAGGCUUaCUU-CGAGG- -5' |
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17615 | 3' | -52.3 | NC_004466.2 | + | 19175 | 0.73 | 0.400516 |
Target: 5'- -cCUGGGUUACaUCCaGGAUGAA-CUCCg -3' miRNA: 3'- gaGACCCGAUG-AGG-CUUACUUcGAGG- -5' |
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17615 | 3' | -52.3 | NC_004466.2 | + | 27229 | 1.13 | 0.000758 |
Target: 5'- cCUCUGGGCUACUCCGAAUGAAGCUCCa -3' miRNA: 3'- -GAGACCCGAUGAGGCUUACUUCGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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