Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 17615 | 5' | -47.2 | NC_004466.2 | + | 16127 | 0.67 | 0.972783 |
|
Target: 5'- aGGAagcggcuAAGCUACAgaagcaaccGUCGGgucuuuuuggcugGGGGUCAGGu -3' miRNA: 3'- -CCU-------UUUGAUGU---------CAGCCa------------CUCCAGUUC- -5' |
|||||||
| 17615 | 5' | -47.2 | NC_004466.2 | + | 27322 | 0.67 | 0.967787 |
|
Target: 5'- aGGAu-AUUACAGUCGGcacUGAuGG-CAAGa -3' miRNA: 3'- -CCUuuUGAUGUCAGCC---ACU-CCaGUUC- -5' |
|||||||
| 17615 | 5' | -47.2 | NC_004466.2 | + | 22917 | 0.68 | 0.96016 |
|
Target: 5'- cGAAGACUuu-GcUGGUcGAGGUCAAGg -3' miRNA: 3'- cCUUUUGAuguCaGCCA-CUCCAGUUC- -5' |
|||||||
| 17615 | 5' | -47.2 | NC_004466.2 | + | 19041 | 0.69 | 0.935903 |
|
Target: 5'- --uAGGCUuguCAGcgaaGGUGGGGUCAAGg -3' miRNA: 3'- ccuUUUGAu--GUCag--CCACUCCAGUUC- -5' |
|||||||
| 17615 | 5' | -47.2 | NC_004466.2 | + | 41439 | 0.71 | 0.837014 |
|
Target: 5'- uGGAAGAgUGCGGgaugaGGUGgGGGUCAGa -3' miRNA: 3'- -CCUUUUgAUGUCag---CCAC-UCCAGUUc -5' |
|||||||
| 17615 | 5' | -47.2 | NC_004466.2 | + | 27188 | 1.13 | 0.00336 |
|
Target: 5'- gGGAAAACUACAGUCGGUGAGGUCAAGa -3' miRNA: 3'- -CCUUUUGAUGUCAGCCACUCCAGUUC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home