Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17616 | 5' | -54.1 | NC_004466.2 | + | 26512 | 0.66 | 0.710277 |
Target: 5'- uGGUGGCaCgaggGCCGAugGGGCuagGCUgagGGa -3' miRNA: 3'- -UCACCG-Ga---CGGCUugUUUG---CGAa--CCa -5' |
|||||||
17616 | 5' | -54.1 | NC_004466.2 | + | 37841 | 0.68 | 0.59709 |
Target: 5'- uGUGGCC-GCUGuAgAGACGCUUGa- -3' miRNA: 3'- uCACCGGaCGGCuUgUUUGCGAACca -5' |
|||||||
17616 | 5' | -54.1 | NC_004466.2 | + | 41235 | 0.74 | 0.257916 |
Target: 5'- uAGUGGCC-GCUGAAgAGcCGCUUGGc -3' miRNA: 3'- -UCACCGGaCGGCUUgUUuGCGAACCa -5' |
|||||||
17616 | 5' | -54.1 | NC_004466.2 | + | 27492 | 1.07 | 0.001207 |
Target: 5'- gAGUGGCCUGCCGAACAAACGCUUGGUc -3' miRNA: 3'- -UCACCGGACGGCUUGUUUGCGAACCA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home