Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17618 | 3' | -51.4 | NC_004466.2 | + | 42390 | 0.66 | 0.842701 |
Target: 5'- cCAUCgguucggacCUCCgGCCUaggguguguacuaUGacGCCCGCCCa -3' miRNA: 3'- aGUAGaa-------GAGGgUGGA-------------AU--UGGGUGGG- -5' |
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17618 | 3' | -51.4 | NC_004466.2 | + | 26368 | 0.68 | 0.764685 |
Target: 5'- --uUCggCUUCCugCUUAACCCuCUCa -3' miRNA: 3'- aguAGaaGAGGGugGAAUUGGGuGGG- -5' |
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17618 | 3' | -51.4 | NC_004466.2 | + | 14373 | 0.68 | 0.764685 |
Target: 5'- gUCGUCaaggCUCCUACCgcccugUCCACCUg -3' miRNA: 3'- -AGUAGaa--GAGGGUGGaauu--GGGUGGG- -5' |
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17618 | 3' | -51.4 | NC_004466.2 | + | 34395 | 0.68 | 0.775193 |
Target: 5'- cCAUCagcUCUCCgguCACCUUucucGACCUACCg -3' miRNA: 3'- aGUAGa--AGAGG---GUGGAA----UUGGGUGGg -5' |
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17618 | 3' | -51.4 | NC_004466.2 | + | 36287 | 0.7 | 0.658189 |
Target: 5'- uUCAUCUUugacaaccaguuggcCUUCCACCagaucACCCACCa -3' miRNA: 3'- -AGUAGAA---------------GAGGGUGGaau--UGGGUGGg -5' |
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17618 | 3' | -51.4 | NC_004466.2 | + | 37975 | 0.7 | 0.653624 |
Target: 5'- cCAgagCUUCU-CCACg--GGCCCACCCu -3' miRNA: 3'- aGUa--GAAGAgGGUGgaaUUGGGUGGG- -5' |
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17618 | 3' | -51.4 | NC_004466.2 | + | 20073 | 0.71 | 0.619329 |
Target: 5'- -gGUUcUCUCCaacagaacUACCUUGACCCACgCCu -3' miRNA: 3'- agUAGaAGAGG--------GUGGAAUUGGGUG-GG- -5' |
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17618 | 3' | -51.4 | NC_004466.2 | + | 44943 | 0.72 | 0.507248 |
Target: 5'- cUCAagg-CUCCCGCCggcUGGCCCugGCCCa -3' miRNA: 3'- -AGUagaaGAGGGUGGa--AUUGGG--UGGG- -5' |
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17618 | 3' | -51.4 | NC_004466.2 | + | 31639 | 0.73 | 0.475193 |
Target: 5'- ---aCUUCUCCUACCccuaucUGACCUAUCCg -3' miRNA: 3'- aguaGAAGAGGGUGGa-----AUUGGGUGGG- -5' |
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17618 | 3' | -51.4 | NC_004466.2 | + | 9284 | 0.74 | 0.444181 |
Target: 5'- aUAUCUUCUCCCACUaugUUAACUacaacuaccaGCCCc -3' miRNA: 3'- aGUAGAAGAGGGUGG---AAUUGGg---------UGGG- -5' |
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17618 | 3' | -51.4 | NC_004466.2 | + | 30154 | 1.14 | 0.000913 |
Target: 5'- uUCAUCUUCUCCCACCUUAACCCACCCa -3' miRNA: 3'- -AGUAGAAGAGGGUGGAAUUGGGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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