Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1762 | 3' | -54.9 | NC_001347.2 | + | 5250 | 0.66 | 0.971719 |
Target: 5'- ----cACCACuCCGUUCUUAUGCGa-- -3' miRNA: 3'- ucuuaUGGUG-GGCGAGAGUACGCcgu -5' |
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1762 | 3' | -54.9 | NC_001347.2 | + | 13512 | 0.67 | 0.942765 |
Target: 5'- cGggUGCuCACCCGC-Cgg--GCGGCc -3' miRNA: 3'- uCuuAUG-GUGGGCGaGaguaCGCCGu -5' |
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1762 | 3' | -54.9 | NC_001347.2 | + | 26591 | 0.66 | 0.965765 |
Target: 5'- gGGAGcACCGuCUCaGCUC-CGUGUGGCGu -3' miRNA: 3'- -UCUUaUGGU-GGG-CGAGaGUACGCCGU- -5' |
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1762 | 3' | -54.9 | NC_001347.2 | + | 38008 | 0.67 | 0.947158 |
Target: 5'- ----aGCCGCCgCGCggcCUCG-GCGGCGg -3' miRNA: 3'- ucuuaUGGUGG-GCGa--GAGUaCGCCGU- -5' |
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1762 | 3' | -54.9 | NC_001347.2 | + | 47425 | 1.09 | 0.005208 |
Target: 5'- aAGAAUACCACCCGCUCUCAUGCGGCAg -3' miRNA: 3'- -UCUUAUGGUGGGCGAGAGUACGCCGU- -5' |
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1762 | 3' | -54.9 | NC_001347.2 | + | 66222 | 0.69 | 0.871989 |
Target: 5'- ----cACCACCCGCgccUUCGUG-GGCAa -3' miRNA: 3'- ucuuaUGGUGGGCGa--GAGUACgCCGU- -5' |
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1762 | 3' | -54.9 | NC_001347.2 | + | 67862 | 0.66 | 0.965765 |
Target: 5'- ----cGCCGCCUGCUCgcUCGUGC-GCu -3' miRNA: 3'- ucuuaUGGUGGGCGAG--AGUACGcCGu -5' |
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1762 | 3' | -54.9 | NC_001347.2 | + | 75554 | 0.67 | 0.955262 |
Target: 5'- cGAGUaggcguagGCCGCCUGCUCgCAggGCGuGCGu -3' miRNA: 3'- uCUUA--------UGGUGGGCGAGaGUa-CGC-CGU- -5' |
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1762 | 3' | -54.9 | NC_001347.2 | + | 77053 | 0.69 | 0.864638 |
Target: 5'- cGcGUGCCGCCgGC-CUCGgacgaaGCGGCAg -3' miRNA: 3'- uCuUAUGGUGGgCGaGAGUa-----CGCCGU- -5' |
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1762 | 3' | -54.9 | NC_001347.2 | + | 79096 | 0.66 | 0.958979 |
Target: 5'- cGGAGUGCCAgaaaggggaaCUGC-CUCGaGCGGCGg -3' miRNA: 3'- -UCUUAUGGUg---------GGCGaGAGUaCGCCGU- -5' |
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1762 | 3' | -54.9 | NC_001347.2 | + | 80166 | 0.68 | 0.928193 |
Target: 5'- cGGAaGCCACCCGCUUagcagCGUGuuGCGc -3' miRNA: 3'- uCUUaUGGUGGGCGAGa----GUACgcCGU- -5' |
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1762 | 3' | -54.9 | NC_001347.2 | + | 89073 | 0.69 | 0.886053 |
Target: 5'- ----gGCCGCCCGUUgCUCcaacagguGUGCGGCc -3' miRNA: 3'- ucuuaUGGUGGGCGA-GAG--------UACGCCGu -5' |
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1762 | 3' | -54.9 | NC_001347.2 | + | 89731 | 0.7 | 0.841379 |
Target: 5'- ----cACCACCCGCcgUCgUCGccUGCGGCGu -3' miRNA: 3'- ucuuaUGGUGGGCG--AG-AGU--ACGCCGU- -5' |
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1762 | 3' | -54.9 | NC_001347.2 | + | 107416 | 0.7 | 0.841379 |
Target: 5'- --uGUACCGCCaCGCUC-CGgcGCGGCGg -3' miRNA: 3'- ucuUAUGGUGG-GCGAGaGUa-CGCCGU- -5' |
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1762 | 3' | -54.9 | NC_001347.2 | + | 140403 | 0.68 | 0.917309 |
Target: 5'- cGggUGCgCACCCGCUUgCccGUGGUg -3' miRNA: 3'- uCuuAUG-GUGGGCGAGaGuaCGCCGu -5' |
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1762 | 3' | -54.9 | NC_001347.2 | + | 174620 | 0.67 | 0.955262 |
Target: 5'- ----cGCUACCCGUaCUCAU-CGGCGa -3' miRNA: 3'- ucuuaUGGUGGGCGaGAGUAcGCCGU- -5' |
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1762 | 3' | -54.9 | NC_001347.2 | + | 208231 | 0.69 | 0.898601 |
Target: 5'- gAGAcgGCCGCcgCCGCuaccgcagaggcuUCUCccGCGGCAg -3' miRNA: 3'- -UCUuaUGGUG--GGCG-------------AGAGuaCGCCGU- -5' |
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1762 | 3' | -54.9 | NC_001347.2 | + | 212009 | 0.67 | 0.947158 |
Target: 5'- gAGGAU-CCAUgCGCUgU-GUGCGGCAu -3' miRNA: 3'- -UCUUAuGGUGgGCGAgAgUACGCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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