Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17620 | 5' | -53.7 | NC_004466.2 | + | 10885 | 0.72 | 0.384358 |
Target: 5'- gGCCCCUAUCU---UGGAUAuguUCCCCu -3' miRNA: 3'- aCGGGGGUAGAaggACUUGUu--AGGGG- -5' |
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17620 | 5' | -53.7 | NC_004466.2 | + | 25228 | 0.66 | 0.759057 |
Target: 5'- aGCCCCCGgaUC-UCCUGcuuUGAUUCCa -3' miRNA: 3'- aCGGGGGU--AGaAGGACuu-GUUAGGGg -5' |
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17620 | 5' | -53.7 | NC_004466.2 | + | 36688 | 0.67 | 0.704876 |
Target: 5'- cGUCgCCAUCUUCCU---CGGUgCCCu -3' miRNA: 3'- aCGGgGGUAGAAGGAcuuGUUAgGGG- -5' |
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17620 | 5' | -53.7 | NC_004466.2 | + | 16882 | 0.67 | 0.682591 |
Target: 5'- gUGCCCUCAUagguucUUUCCUGAGC--UCCa- -3' miRNA: 3'- -ACGGGGGUA------GAAGGACUUGuuAGGgg -5' |
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17620 | 5' | -53.7 | NC_004466.2 | + | 26361 | 0.67 | 0.682591 |
Target: 5'- aGCCCCUuucggCUUCCUGcuUAA-CCCUc -3' miRNA: 3'- aCGGGGGua---GAAGGACuuGUUaGGGG- -5' |
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17620 | 5' | -53.7 | NC_004466.2 | + | 32442 | 0.67 | 0.660102 |
Target: 5'- cUGCgCCCA-CUgCCUGGGCAuGUCCUUg -3' miRNA: 3'- -ACGgGGGUaGAaGGACUUGU-UAGGGG- -5' |
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17620 | 5' | -53.7 | NC_004466.2 | + | 26089 | 0.68 | 0.592327 |
Target: 5'- -uUCCCCAgCUUCCUuGACAcaaGUCUCCa -3' miRNA: 3'- acGGGGGUaGAAGGAcUUGU---UAGGGG- -5' |
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17620 | 5' | -53.7 | NC_004466.2 | + | 42491 | 0.69 | 0.579976 |
Target: 5'- uUGCagCCCCGUCcucgUCCUGGcggauguACAGacgCCCCg -3' miRNA: 3'- -ACG--GGGGUAGa---AGGACU-------UGUUa--GGGG- -5' |
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17620 | 5' | -53.7 | NC_004466.2 | + | 33025 | 1.13 | 0.000559 |
Target: 5'- uUGCCCCCAUCUUCCUGAACAAUCCCCa -3' miRNA: 3'- -ACGGGGGUAGAAGGACUUGUUAGGGG- -5' |
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17620 | 5' | -53.7 | NC_004466.2 | + | 36477 | 0.72 | 0.393614 |
Target: 5'- aUGUCCUCcggAUCUUCCU--GCAAUCCCg -3' miRNA: 3'- -ACGGGGG---UAGAAGGAcuUGUUAGGGg -5' |
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17620 | 5' | -53.7 | NC_004466.2 | + | 40831 | 0.68 | 0.62619 |
Target: 5'- gGCCCUCAuggUCUUcucCCUGAACAacgagcaacggGUCgCCg -3' miRNA: 3'- aCGGGGGU---AGAA---GGACUUGU-----------UAGgGG- -5' |
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17620 | 5' | -53.7 | NC_004466.2 | + | 38803 | 0.67 | 0.660102 |
Target: 5'- gGCCCU--UCUUCCaGAGCAAcaagcugcuUCCUCa -3' miRNA: 3'- aCGGGGguAGAAGGaCUUGUU---------AGGGG- -5' |
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17620 | 5' | -53.7 | NC_004466.2 | + | 40331 | 0.67 | 0.693764 |
Target: 5'- gGCCUCCAUCUUCUacGGGCucuucuUCCUg -3' miRNA: 3'- aCGGGGGUAGAAGGa-CUUGuu----AGGGg -5' |
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17620 | 5' | -53.7 | NC_004466.2 | + | 33378 | 0.66 | 0.747377 |
Target: 5'- gGCCCCgAUCgUCCUGGccgaaGCGGUggauaugCUCCa -3' miRNA: 3'- aCGGGGgUAGaAGGACU-----UGUUA-------GGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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