Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17622 | 3' | -56.9 | NC_004466.2 | + | 41620 | 0.66 | 0.589536 |
Target: 5'- aCCUACGGCUgCCagGGUgaauccgagcucaCCACGGGGc -3' miRNA: 3'- cGGAUGCUGAaGGa-CCG-------------GGUGCUCCu -5' |
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17622 | 3' | -56.9 | NC_004466.2 | + | 34083 | 0.66 | 0.579712 |
Target: 5'- uGCUUGCGguaGCUUCCUgcGGCUCG-GAGGu -3' miRNA: 3'- -CGGAUGC---UGAAGGA--CCGGGUgCUCCu -5' |
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17622 | 3' | -56.9 | NC_004466.2 | + | 33382 | 0.66 | 0.579712 |
Target: 5'- uGCCggcccCGAUcgUCCUGGCCgaaGCGGuGGAu -3' miRNA: 3'- -CGGau---GCUGa-AGGACCGGg--UGCU-CCU- -5' |
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17622 | 3' | -56.9 | NC_004466.2 | + | 36278 | 0.66 | 0.568838 |
Target: 5'- cGCaaGCGugauCUUCCcGagcugcaaGCCCACGAGGAa -3' miRNA: 3'- -CGgaUGCu---GAAGGaC--------CGGGUGCUCCU- -5' |
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17622 | 3' | -56.9 | NC_004466.2 | + | 37570 | 0.68 | 0.454147 |
Target: 5'- aGCCUACGAagaCUUCCgGGUcagcaCCAaucaGAGGGa -3' miRNA: 3'- -CGGAUGCU---GAAGGaCCG-----GGUg---CUCCU- -5' |
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17622 | 3' | -56.9 | NC_004466.2 | + | 34933 | 1.1 | 0.000476 |
Target: 5'- uGCCUACGACUUCCUGGCCCACGAGGAc -3' miRNA: 3'- -CGGAUGCUGAAGGACCGGGUGCUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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