miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17624 5' -55.7 NC_004466.2 + 35466 0.66 0.653688
Target:  5'- cAGCCagGGcAGcagccgccaGACCCAUC-UCAcgGCCa -3'
miRNA:   3'- -UCGGg-CC-UC---------CUGGGUAGuAGUuaCGG- -5'
17624 5' -55.7 NC_004466.2 + 23686 0.66 0.631397
Target:  5'- -uCCCGGAGGaACCCAcCGcCAAcccgaagGCCa -3'
miRNA:   3'- ucGGGCCUCC-UGGGUaGUaGUUa------CGG- -5'
17624 5' -55.7 NC_004466.2 + 14842 0.67 0.586899
Target:  5'- cAGCCCuGGAGaACCCAgagCGUUggUcCCg -3'
miRNA:   3'- -UCGGG-CCUCcUGGGUa--GUAGuuAcGG- -5'
17624 5' -55.7 NC_004466.2 + 9818 0.67 0.583579
Target:  5'- aAG-CCGGAGGAugcaacuacuaaCUgauaacuugggcagCAUCGUCAGUGCCc -3'
miRNA:   3'- -UCgGGCCUCCU------------GG--------------GUAGUAGUUACGG- -5'
17624 5' -55.7 NC_004466.2 + 10962 0.67 0.553899
Target:  5'- -aCCUGGcagauGGGACuCCAUCAUUGAUGUg -3'
miRNA:   3'- ucGGGCC-----UCCUG-GGUAGUAGUUACGg -5'
17624 5' -55.7 NC_004466.2 + 36977 0.68 0.521471
Target:  5'- cGGCCUGGAuGACgCCAUCG-CA--GCCg -3'
miRNA:   3'- -UCGGGCCUcCUG-GGUAGUaGUuaCGG- -5'
17624 5' -55.7 NC_004466.2 + 2530 0.68 0.521471
Target:  5'- cGuCCCGGAgaggauGGACCCAUCAcCcuaGCCc -3'
miRNA:   3'- uC-GGGCCU------CCUGGGUAGUaGuuaCGG- -5'
17624 5' -55.7 NC_004466.2 + 36952 0.68 0.510823
Target:  5'- aAGCCUuGAGGGCCgaGUCGU--AUGCCc -3'
miRNA:   3'- -UCGGGcCUCCUGGg-UAGUAguUACGG- -5'
17624 5' -55.7 NC_004466.2 + 26265 0.68 0.510823
Target:  5'- cAGCuuGGAGGAgg-GUguUCAAUGCCu -3'
miRNA:   3'- -UCGggCCUCCUgggUAguAGUUACGG- -5'
17624 5' -55.7 NC_004466.2 + 39250 0.68 0.500266
Target:  5'- -cCCCGGAGGucugguauCCCGUgGUCAA-GCUc -3'
miRNA:   3'- ucGGGCCUCCu-------GGGUAgUAGUUaCGG- -5'
17624 5' -55.7 NC_004466.2 + 29015 0.69 0.446072
Target:  5'- gGGCCCGaAGGcCCCAccUCAUUuacuuuuucuuucgAAUGCCu -3'
miRNA:   3'- -UCGGGCcUCCuGGGU--AGUAG--------------UUACGG- -5'
17624 5' -55.7 NC_004466.2 + 21965 0.69 0.429389
Target:  5'- gGGCCCuuuGuAGGACUCAUCGUgAGUGUa -3'
miRNA:   3'- -UCGGGc--C-UCCUGGGUAGUAgUUACGg -5'
17624 5' -55.7 NC_004466.2 + 32253 0.7 0.410242
Target:  5'- -uUCUGGAGGgcGCCCGauUCGUCGggcAUGCCa -3'
miRNA:   3'- ucGGGCCUCC--UGGGU--AGUAGU---UACGG- -5'
17624 5' -55.7 NC_004466.2 + 44637 0.7 0.382539
Target:  5'- uGCCUGGAGcuGGCCC-UUGUCGAUGgCa -3'
miRNA:   3'- uCGGGCCUC--CUGGGuAGUAGUUACgG- -5'
17624 5' -55.7 NC_004466.2 + 38275 1.11 0.00051
Target:  5'- aAGCCCGGAGGACCCAUCAUCAAUGCCc -3'
miRNA:   3'- -UCGGGCCUCCUGGGUAGUAGUUACGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.