Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17626 | 5' | -53.9 | NC_004466.2 | + | 615 | 0.72 | 0.375558 |
Target: 5'- cGGGGGAUGGuGGccuagguagaacguGGUGGCCAUUaGGCCa -3' miRNA: 3'- -CCCUUUACCcUC--------------CUAUCGGUGA-CCGG- -5' |
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17626 | 5' | -53.9 | NC_004466.2 | + | 14158 | 0.66 | 0.750121 |
Target: 5'- aGGGcucUGGGGGcGGUGGUgG-UGGCCu -3' miRNA: 3'- -CCCuuuACCCUC-CUAUCGgUgACCGG- -5' |
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17626 | 5' | -53.9 | NC_004466.2 | + | 16121 | 0.69 | 0.539482 |
Target: 5'- -cGAAGcuucUGGGA-GAUAGCCgACUGGUCu -3' miRNA: 3'- ccCUUU----ACCCUcCUAUCGG-UGACCGG- -5' |
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17626 | 5' | -53.9 | NC_004466.2 | + | 25545 | 0.66 | 0.760659 |
Target: 5'- gGGGuGAUGGuGAGGAUGauCCGCUGuuCg -3' miRNA: 3'- -CCCuUUACC-CUCCUAUc-GGUGACcgG- -5' |
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17626 | 5' | -53.9 | NC_004466.2 | + | 26126 | 0.66 | 0.760659 |
Target: 5'- cGGAGAgucgcaaGGuccucGGGAUGGCacuccCACUGGCCu -3' miRNA: 3'- cCCUUUac-----CC-----UCCUAUCG-----GUGACCGG- -5' |
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17626 | 5' | -53.9 | NC_004466.2 | + | 30412 | 0.68 | 0.593766 |
Target: 5'- uGGGAcGUGGaGgcauucaAGGAU-GCUGCUGGUCa -3' miRNA: 3'- -CCCUuUACC-C-------UCCUAuCGGUGACCGG- -5' |
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17626 | 5' | -53.9 | NC_004466.2 | + | 32564 | 0.68 | 0.616215 |
Target: 5'- cGGcGGAGcuuaaccUGGGAcaGGAUAGCC-C-GGCCa -3' miRNA: 3'- -CC-CUUU-------ACCCU--CCUAUCGGuGaCCGG- -5' |
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17626 | 5' | -53.9 | NC_004466.2 | + | 37339 | 0.66 | 0.750121 |
Target: 5'- -aGAGGUGGGAGGAcAGgUugUcgaugacuuccaGGCCg -3' miRNA: 3'- ccCUUUACCCUCCUaUCgGugA------------CCGG- -5' |
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17626 | 5' | -53.9 | NC_004466.2 | + | 38826 | 1.13 | 0.00055 |
Target: 5'- gGGGAAAUGGGAGGAUAGCCACUGGCCc -3' miRNA: 3'- -CCCUUUACCCUCCUAUCGGUGACCGG- -5' |
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17626 | 5' | -53.9 | NC_004466.2 | + | 39186 | 0.67 | 0.684686 |
Target: 5'- -----uUGGGAGGAagaGGCCcaccuggaGCUGGCUg -3' miRNA: 3'- cccuuuACCCUCCUa--UCGG--------UGACCGG- -5' |
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17626 | 5' | -53.9 | NC_004466.2 | + | 40656 | 0.66 | 0.72868 |
Target: 5'- cGGAugauGUGGacucgcacGAGGGUAucgugguugucGCUGCUGGCCc -3' miRNA: 3'- cCCUu---UACC--------CUCCUAU-----------CGGUGACCGG- -5' |
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17626 | 5' | -53.9 | NC_004466.2 | + | 44130 | 0.66 | 0.757511 |
Target: 5'- aGGAAAUGGGuaucuaaccccaacuGAUgaGGCCAaggugauucCUGGCCg -3' miRNA: 3'- cCCUUUACCCuc-------------CUA--UCGGU---------GACCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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