miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17628 5' -55.3 NC_004466.2 + 4483 0.66 0.642968
Target:  5'- uUAGGGCCucAGAaCGCugCUUGGAu-- -3'
miRNA:   3'- -GUUCCGGu-UCUcGCGugGGACCUuag -5'
17628 5' -55.3 NC_004466.2 + 8347 0.66 0.642968
Target:  5'- aAGGGUCGugcuacuGAGauCACCCUGGAcgCu -3'
miRNA:   3'- gUUCCGGUu------CUCgcGUGGGACCUuaG- -5'
17628 5' -55.3 NC_004466.2 + 651 0.66 0.60784
Target:  5'- -uAGGCCAGGuucCGCGggguuugucaagcCCCUGGggUUu -3'
miRNA:   3'- guUCCGGUUCuc-GCGU-------------GGGACCuuAG- -5'
17628 5' -55.3 NC_004466.2 + 35536 0.66 0.597668
Target:  5'- -uGGGUCuGGcGGCGCuGCCCUGGcuGUCa -3'
miRNA:   3'- guUCCGGuUC-UCGCG-UGGGACCu-UAG- -5'
17628 5' -55.3 NC_004466.2 + 31687 0.66 0.596539
Target:  5'- uCAAGGCCGuAGAGgaugaguUGCGCCugCUGGAGa- -3'
miRNA:   3'- -GUUCCGGU-UCUC-------GCGUGG--GACCUUag -5'
17628 5' -55.3 NC_004466.2 + 22089 0.66 0.586396
Target:  5'- uCGAGGCaguagguaAGGAGCGUAUCCacgggcUGGuAGUCg -3'
miRNA:   3'- -GUUCCGg-------UUCUCGCGUGGG------ACC-UUAG- -5'
17628 5' -55.3 NC_004466.2 + 30660 0.67 0.575164
Target:  5'- -uGGGgCAAGAGCuauCCCUGGGAa- -3'
miRNA:   3'- guUCCgGUUCUCGcguGGGACCUUag -5'
17628 5' -55.3 NC_004466.2 + 45373 0.67 0.575164
Target:  5'- gCAAGGCCAAGGcuuuGgGUuacaACCUUgGGAAUCu -3'
miRNA:   3'- -GUUCCGGUUCU----CgCG----UGGGA-CCUUAG- -5'
17628 5' -55.3 NC_004466.2 + 26214 0.67 0.563982
Target:  5'- gAAGGCCAgugGGAGUGCcauCCCgaGGAc-- -3'
miRNA:   3'- gUUCCGGU---UCUCGCGu--GGGa-CCUuag -5'
17628 5' -55.3 NC_004466.2 + 45063 0.67 0.530819
Target:  5'- cCAuuGCCAaccGGGGUGCuGCCCUGGAc-- -3'
miRNA:   3'- -GUucCGGU---UCUCGCG-UGGGACCUuag -5'
17628 5' -55.3 NC_004466.2 + 14290 0.69 0.436427
Target:  5'- gCGGGGCCuccgAAGAGUGCuCCCaGGGAg- -3'
miRNA:   3'- -GUUCCGG----UUCUCGCGuGGGaCCUUag -5'
17628 5' -55.3 NC_004466.2 + 986 0.7 0.388331
Target:  5'- aGGGGCUAGGGGCaUACCCcugGGGAUa -3'
miRNA:   3'- gUUCCGGUUCUCGcGUGGGa--CCUUAg -5'
17628 5' -55.3 NC_004466.2 + 32384 0.71 0.334568
Target:  5'- -cGGGCCuggacgaAGGAGguaGCGCCCUGGAggCa -3'
miRNA:   3'- guUCCGG-------UUCUCg--CGUGGGACCUuaG- -5'
17628 5' -55.3 NC_004466.2 + 15688 0.71 0.310986
Target:  5'- aGAGGUUAAGcGGgGCACUCUGGAAg- -3'
miRNA:   3'- gUUCCGGUUC-UCgCGUGGGACCUUag -5'
17628 5' -55.3 NC_004466.2 + 44832 0.74 0.202914
Target:  5'- aCAAGGCCAcucgucuGGAGCGUgccgcagagaaACCCUGGu-UCa -3'
miRNA:   3'- -GUUCCGGU-------UCUCGCG-----------UGGGACCuuAG- -5'
17628 5' -55.3 NC_004466.2 + 39364 1.1 0.000525
Target:  5'- cCAAGGCCAAGAGCGCACCCUGGAAUCg -3'
miRNA:   3'- -GUUCCGGUUCUCGCGUGGGACCUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.