miRNA: 3'- uCGGgGUCguACAgcGGGGAGUGAAG- -5'
miRNA: 3'- uCGGGG--UCGU--------ACAGCGGGGAG---------UGAAG- -5'
miRNA: 3'- uCGGGGUCGuaCAgCGGGGAGUgaag -5'
miRNA: 3'- uCG-GGGUCGUAcaGCG--GGGAGUGAAG- -5'
miRNA: 3'- -UCGGGGUCGUACAGCGGGGAGUGAAG- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 17629 | 5' | -58.9 | NC_004466.2 | + | 19083 | 0.67 | 0.395843 |
|
Target: 5'- cGCCgUAGguUGU--CCCCUCAUUUCa -3' miRNA: 3'- uCGGgGUCguACAgcGGGGAGUGAAG- -5' |
|||||||
| 17629 | 5' | -58.9 | NC_004466.2 | + | 43093 | 0.67 | 0.386767 |
|
Target: 5'- cGUCCCguGGCGauaccacuUGUCGUCCCUCuacaacaugGCUUCc -3' miRNA: 3'- uCGGGG--UCGU--------ACAGCGGGGAG---------UGAAG- -5' |
|||||||
| 17629 | 5' | -58.9 | NC_004466.2 | + | 8070 | 0.69 | 0.288955 |
|
Target: 5'- cGCCCUGGUcgGU-GCCCCUCAg--- -3' miRNA: 3'- uCGGGGUCGuaCAgCGGGGAGUgaag -5' |
|||||||
| 17629 | 5' | -58.9 | NC_004466.2 | + | 44563 | 0.69 | 0.26775 |
|
Target: 5'- cGCaCCCGGCGUuaCGCugCCUUCGCUUCg -3' miRNA: 3'- uCG-GGGUCGUAcaGCG--GGGAGUGAAG- -5' |
|||||||
| 17629 | 5' | -58.9 | NC_004466.2 | + | 40233 | 1.09 | 0.000293 |
|
Target: 5'- aAGCCCCAGCAUGUCGCCCCUCACUUCu -3' miRNA: 3'- -UCGGGGUCGUACAGCGGGGAGUGAAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home