Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1763 | 3' | -59.6 | NC_001347.2 | + | 182173 | 0.66 | 0.885988 |
Target: 5'- uCCCUggaagcgugUGUGGgccggCCCUCGGGguGCGGGuGGCg -3' miRNA: 3'- -GGGG---------ACACCa----GGGGGCUC--UGCUC-UCG- -5' |
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1763 | 3' | -59.6 | NC_001347.2 | + | 202708 | 0.66 | 0.872718 |
Target: 5'- uCUCCgucgGUGGUggaCCCCCccuGACuGAGAGUu -3' miRNA: 3'- -GGGGa---CACCA---GGGGGcu-CUG-CUCUCG- -5' |
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1763 | 3' | -59.6 | NC_001347.2 | + | 912 | 0.66 | 0.858695 |
Target: 5'- gCCCCU-UGGUCgcggCCgCGGGGCcgGAGGGCc -3' miRNA: 3'- -GGGGAcACCAG----GGgGCUCUG--CUCUCG- -5' |
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1763 | 3' | -59.6 | NC_001347.2 | + | 159668 | 0.67 | 0.851412 |
Target: 5'- gCCgaCUGUGGUCUgUUCGAacGugGAGGGCg -3' miRNA: 3'- -GGg-GACACCAGG-GGGCU--CugCUCUCG- -5' |
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1763 | 3' | -59.6 | NC_001347.2 | + | 192922 | 0.67 | 0.828543 |
Target: 5'- cUCCCg--GG-UgCCCGAGACGGGGGg -3' miRNA: 3'- -GGGGacaCCaGgGGGCUCUGCUCUCg -5' |
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1763 | 3' | -59.6 | NC_001347.2 | + | 178851 | 0.68 | 0.787396 |
Target: 5'- uCCUCUGUcGUCCCggccuCCGu--CGAGAGCg -3' miRNA: 3'- -GGGGACAcCAGGG-----GGCucuGCUCUCG- -5' |
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1763 | 3' | -59.6 | NC_001347.2 | + | 117962 | 0.68 | 0.787396 |
Target: 5'- gCUCCUGccacgccGGUCCCUgGGGACGaAGAacGCg -3' miRNA: 3'- -GGGGACa------CCAGGGGgCUCUGC-UCU--CG- -5' |
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1763 | 3' | -59.6 | NC_001347.2 | + | 64427 | 0.68 | 0.761186 |
Target: 5'- --aCUGUGGUUCCCCcucuacuucGAGGCuGAGuGCa -3' miRNA: 3'- gggGACACCAGGGGG---------CUCUG-CUCuCG- -5' |
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1763 | 3' | -59.6 | NC_001347.2 | + | 142974 | 0.69 | 0.7432 |
Target: 5'- gCCCCc---GUCgCCCGAGGCGgaGGAGCc -3' miRNA: 3'- -GGGGacacCAGgGGGCUCUGC--UCUCG- -5' |
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1763 | 3' | -59.6 | NC_001347.2 | + | 135901 | 0.69 | 0.734076 |
Target: 5'- cCCCCgcucgGGUCCCCCcgggccacGGACGGGAa- -3' miRNA: 3'- -GGGGaca--CCAGGGGGc-------UCUGCUCUcg -5' |
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1763 | 3' | -59.6 | NC_001347.2 | + | 206187 | 0.69 | 0.734076 |
Target: 5'- uCCCCguccagguagGUGGgguaggCCgCCGAGACGuuAGCc -3' miRNA: 3'- -GGGGa---------CACCa-----GGgGGCUCUGCucUCG- -5' |
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1763 | 3' | -59.6 | NC_001347.2 | + | 62416 | 0.73 | 0.499013 |
Target: 5'- gCCCUacuucaagcaGUGGUagggCCCGAGACGAGAGg -3' miRNA: 3'- gGGGA----------CACCAgg--GGGCUCUGCUCUCg -5' |
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1763 | 3' | -59.6 | NC_001347.2 | + | 189985 | 0.75 | 0.424552 |
Target: 5'- gCCgCCUGUGGccUCCCCCuccauccugaaaccgGGGGCGAGcGCg -3' miRNA: 3'- -GG-GGACACC--AGGGGG---------------CUCUGCUCuCG- -5' |
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1763 | 3' | -59.6 | NC_001347.2 | + | 46944 | 1.12 | 0.001739 |
Target: 5'- cCCCCUGUGGUCCCCCGAGACGAGAGCc -3' miRNA: 3'- -GGGGACACCAGGGGGCUCUGCUCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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