Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17630 | 5' | -55.6 | NC_004466.2 | + | 41311 | 1.09 | 0.000536 |
Target: 5'- aUAUCAGCCAAGCGGCUCUUCAGCGGCc -3' miRNA: 3'- -AUAGUCGGUUCGCCGAGAAGUCGCCG- -5' |
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17630 | 5' | -55.6 | NC_004466.2 | + | 16460 | 0.71 | 0.332949 |
Target: 5'- -cUCAGCCAguuccgcagcaauAGCGGCUUucauUUCAGgGGa -3' miRNA: 3'- auAGUCGGU-------------UCGCCGAG----AAGUCgCCg -5' |
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17630 | 5' | -55.6 | NC_004466.2 | + | 14150 | 0.69 | 0.405355 |
Target: 5'- cGUCA-CCAAG-GGCUCUgggggCGGUGGUg -3' miRNA: 3'- aUAGUcGGUUCgCCGAGAa----GUCGCCG- -5' |
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17630 | 5' | -55.6 | NC_004466.2 | + | 28817 | 0.69 | 0.405355 |
Target: 5'- --gCAGCUcuagAGGCaGC-CUUCAGCGGUg -3' miRNA: 3'- auaGUCGG----UUCGcCGaGAAGUCGCCG- -5' |
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17630 | 5' | -55.6 | NC_004466.2 | + | 2456 | 0.69 | 0.405355 |
Target: 5'- -uUUAGCCAAGUcuGGCUCUUCGuCGaGUa -3' miRNA: 3'- auAGUCGGUUCG--CCGAGAAGUcGC-CG- -5' |
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17630 | 5' | -55.6 | NC_004466.2 | + | 41659 | 0.68 | 0.46498 |
Target: 5'- aGUCgAGCCGAuCGGCUUacCuGCGGCa -3' miRNA: 3'- aUAG-UCGGUUcGCCGAGaaGuCGCCG- -5' |
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17630 | 5' | -55.6 | NC_004466.2 | + | 37598 | 0.67 | 0.496455 |
Target: 5'- cAUCuGCCAu-CGGCUUcgUCGGUGGUa -3' miRNA: 3'- aUAGuCGGUucGCCGAGa-AGUCGCCG- -5' |
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17630 | 5' | -55.6 | NC_004466.2 | + | 8853 | 0.67 | 0.528855 |
Target: 5'- --aCAcCCGAGUGGCgcUCUUCGGCGuuaGCg -3' miRNA: 3'- auaGUcGGUUCGCCG--AGAAGUCGC---CG- -5' |
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17630 | 5' | -55.6 | NC_004466.2 | + | 30382 | 0.67 | 0.550883 |
Target: 5'- gGUCAGCUccgGGGCaaGCUCUUCAuGUGGa -3' miRNA: 3'- aUAGUCGG---UUCGc-CGAGAAGU-CGCCg -5' |
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17630 | 5' | -55.6 | NC_004466.2 | + | 9663 | 0.66 | 0.584416 |
Target: 5'- --cCAGUCGAGa-GCUagcgaagUCAGCGGCa -3' miRNA: 3'- auaGUCGGUUCgcCGAga-----AGUCGCCG- -5' |
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17630 | 5' | -55.6 | NC_004466.2 | + | 37920 | 0.66 | 0.594561 |
Target: 5'- -cUCGGgaaaccuUCAAGCGuCUCUaCAGCGGCc -3' miRNA: 3'- auAGUC-------GGUUCGCcGAGAaGUCGCCG- -5' |
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17630 | 5' | -55.6 | NC_004466.2 | + | 29323 | 0.66 | 0.614926 |
Target: 5'- --gCGGUgaaaCGGGCguuGGCUCUaagucaggagaugcUCAGCGGCa -3' miRNA: 3'- auaGUCG----GUUCG---CCGAGA--------------AGUCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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