miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17632 3' -52.7 NC_004466.2 + 22175 0.67 0.772748
Target:  5'- gCCuuacGGUGGUUCC--GCCGAGcaucGCCUCa -3'
miRNA:   3'- -GGuu--CCACUAAGGacCGGCUU----UGGGG- -5'
17632 3' -52.7 NC_004466.2 + 6734 0.67 0.772748
Target:  5'- ---cGGUGAUgaccUCCUGGCCcccggugauGAAACCg- -3'
miRNA:   3'- gguuCCACUA----AGGACCGG---------CUUUGGgg -5'
17632 3' -52.7 NC_004466.2 + 27141 0.67 0.762379
Target:  5'- cCCAGGGaUGAUUcCCUGGagcuucauUCGGAguaGCCCa -3'
miRNA:   3'- -GGUUCC-ACUAA-GGACC--------GGCUU---UGGGg -5'
17632 3' -52.7 NC_004466.2 + 24921 0.67 0.75187
Target:  5'- -uGAGGUaGA--CCUGGggGAAACCCCa -3'
miRNA:   3'- ggUUCCA-CUaaGGACCggCUUUGGGG- -5'
17632 3' -52.7 NC_004466.2 + 41630 0.68 0.726154
Target:  5'- gCCAGGGUGAaUCCgagcucaccaCGggGCUCCu -3'
miRNA:   3'- -GGUUCCACUaAGGaccg------GCuuUGGGG- -5'
17632 3' -52.7 NC_004466.2 + 12484 0.68 0.705385
Target:  5'- cCCAGGGgcaaaauaauuaaccGUUCCUGGCUuaagcuucuuagGggGCUCCa -3'
miRNA:   3'- -GGUUCCac-------------UAAGGACCGG------------CuuUGGGG- -5'
17632 3' -52.7 NC_004466.2 + 42078 0.69 0.663123
Target:  5'- ---cGGUGAUgaaCUGGCCGAaguugauGACCUUg -3'
miRNA:   3'- gguuCCACUAag-GACCGGCU-------UUGGGG- -5'
17632 3' -52.7 NC_004466.2 + 34725 0.69 0.641787
Target:  5'- cUCAAGGuUGAUUCCcauaUGGuuGcAGCCaCCa -3'
miRNA:   3'- -GGUUCC-ACUAAGG----ACCggCuUUGG-GG- -5'
17632 3' -52.7 NC_004466.2 + 42790 0.69 0.63054
Target:  5'- aCCAAGGgGGUacucCCUGGUgCaAAACCCCg -3'
miRNA:   3'- -GGUUCCaCUAa---GGACCG-GcUUUGGGG- -5'
17632 3' -52.7 NC_004466.2 + 14203 0.71 0.552404
Target:  5'- cCCuGGGUGGUgccucCCUGGgagcacucuuCgGAGGCCCCg -3'
miRNA:   3'- -GGuUCCACUAa----GGACC----------GgCUUUGGGG- -5'
17632 3' -52.7 NC_004466.2 + 33407 0.73 0.407814
Target:  5'- gCCAauccGGGUGAagaaUUCCUGguGCCG--GCCCCg -3'
miRNA:   3'- -GGU----UCCACU----AAGGAC--CGGCuuUGGGG- -5'
17632 3' -52.7 NC_004466.2 + 39296 0.81 0.147005
Target:  5'- uCCAGGGUGcgcUCUUGGCCuuGGACCCCa -3'
miRNA:   3'- -GGUUCCACua-AGGACCGGc-UUUGGGG- -5'
17632 3' -52.7 NC_004466.2 + 44099 1.13 0.000827
Target:  5'- gCCAAGGUGAUUCCUGGCCGAAACCCCc -3'
miRNA:   3'- -GGUUCCACUAAGGACCGGCUUUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.