miRNA display CGI

Results 1 - 8 of 8 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
17635	5'	-56.5	NC_004466.2	+	10517	0.66	0.62693
	Target:  5'- -cCGAGGGGcu-ACCaCCCuGACUGGUu -3' miRNA:   3'- gaGUUCCCCaacUGG-GGGcCUGAUCG- -5'
17635	5'	-56.5	NC_004466.2	+	729	0.66	0.593893
	Target:  5'- -cCAGGGGcUUGAcaaaCCCCgCGGAacCUGGCc -3' miRNA:   3'- gaGUUCCCcAACU----GGGG-GCCU--GAUCG- -5'
17635	5'	-56.5	NC_004466.2	+	17025	0.66	0.593893
	Target:  5'- gUCcAGGGGUUacuACCCUCGGGgUcaAGCu -3' miRNA:   3'- gAGuUCCCCAAc--UGGGGGCCUgA--UCG- -5'
17635	5'	-56.5	NC_004466.2	+	5612	0.66	0.567662
	Target:  5'- cCUCAAGGcGGUcaagcaucccauaGACuCCCCGGACa--- -3' miRNA:   3'- -GAGUUCC-CCAa------------CUG-GGGGCCUGaucg -5'
17635	5'	-56.5	NC_004466.2	+	16960	0.69	0.417938
	Target:  5'- -cCGAGGGaGUa-ACCCCUGGACU-GCu -3' miRNA:   3'- gaGUUCCC-CAacUGGGGGCCUGAuCG- -5'
17635	5'	-56.5	NC_004466.2	+	33806	0.7	0.363674
	Target:  5'- -gCAAcGGGGUcccAUCCaCCGGACUGGCc -3' miRNA:   3'- gaGUU-CCCCAac-UGGG-GGCCUGAUCG- -5'
17635	5'	-56.5	NC_004466.2	+	22551	0.71	0.338433
	Target:  5'- -cCGAGGuGGUcaacauUGACCCCUGGGCggacuugGGUa -3' miRNA:   3'- gaGUUCC-CCA------ACUGGGGGCCUGa------UCG- -5'
17635	5'	-56.5	NC_004466.2	+	942	1.1	0.000484
	Target:  5'- gCUCAAGGGGUUGACCCCCGGACUAGCc -3' miRNA:   3'- -GAGUUCCCCAACUGGGGGCCUGAUCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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