Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17638 | 5' | -54.8 | NC_004466.2 | + | 40875 | 0.67 | 0.591123 |
Target: 5'- --aUGGaUGUUcuccAGGCCCUGGCUGAc- -3' miRNA: 3'- cugACC-ACGAu---UUCGGGACCGACUcu -5' |
|||||||
17638 | 5' | -54.8 | NC_004466.2 | + | 15475 | 0.68 | 0.528447 |
Target: 5'- uACUGGUcuucugGCUucGGCCCUagacaagacugguaaGGCUGGGGa -3' miRNA: 3'- cUGACCA------CGAuuUCGGGA---------------CCGACUCU- -5' |
|||||||
17638 | 5' | -54.8 | NC_004466.2 | + | 34648 | 0.73 | 0.2748 |
Target: 5'- ---gGGUGCUGcuGCCCUGGUcuggUGGGAu -3' miRNA: 3'- cugaCCACGAUuuCGGGACCG----ACUCU- -5' |
|||||||
17638 | 5' | -54.8 | NC_004466.2 | + | 41839 | 0.74 | 0.234128 |
Target: 5'- gGGCUucgaGGaUGCUGAAcccGCUCUGGCUGAGGa -3' miRNA: 3'- -CUGA----CC-ACGAUUU---CGGGACCGACUCU- -5' |
|||||||
17638 | 5' | -54.8 | NC_004466.2 | + | 9732 | 1.09 | 0.000691 |
Target: 5'- uGACUGGUGCUAAAGCCCUGGCUGAGAa -3' miRNA: 3'- -CUGACCACGAUUUCGGGACCGACUCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home