miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1764 3' -63.5 NC_001347.2 + 43979 1.09 0.001276
Target:  5'- gCCGACCGGCCGCCGACCCGUUCCCCAg -3'
miRNA:   3'- -GGCUGGCCGGCGGCUGGGCAAGGGGU- -5'
1764 3' -63.5 NC_001347.2 + 13530 0.75 0.249684
Target:  5'- gCGGCCcgGGCCGCCGugCUGgagggccgCCCCAc -3'
miRNA:   3'- gGCUGG--CCGGCGGCugGGCaa------GGGGU- -5'
1764 3' -63.5 NC_001347.2 + 30608 0.74 0.299046
Target:  5'- gCGGCCGGCCGCgGugCCGgcggcuaugauccugUggUCCCCGu -3'
miRNA:   3'- gGCUGGCCGGCGgCugGGC---------------A--AGGGGU- -5'
1764 3' -63.5 NC_001347.2 + 180221 0.72 0.379086
Target:  5'- -aGGCCGuGCCGCCGcGCCguaGUUCUCCGa -3'
miRNA:   3'- ggCUGGC-CGGCGGC-UGGg--CAAGGGGU- -5'
1764 3' -63.5 NC_001347.2 + 166135 0.71 0.433873
Target:  5'- uUCGGCC-GCCGCCGcaacGCCCGUgCCCgCGg -3'
miRNA:   3'- -GGCUGGcCGGCGGC----UGGGCAaGGG-GU- -5'
1764 3' -63.5 NC_001347.2 + 65891 0.71 0.44207
Target:  5'- gCCGACC-GCCGCCG-CCC--UCCCuCAa -3'
miRNA:   3'- -GGCUGGcCGGCGGCuGGGcaAGGG-GU- -5'
1764 3' -63.5 NC_001347.2 + 28251 0.71 0.467171
Target:  5'- aCUGGCUGGaacgucggCGCCGACCCGggaCCCUg -3'
miRNA:   3'- -GGCUGGCCg-------GCGGCUGGGCaa-GGGGu -5'
1764 3' -63.5 NC_001347.2 + 200936 0.7 0.4757
Target:  5'- gCG-CUGGcCCGUCGACCUuaUCCCCAu -3'
miRNA:   3'- gGCuGGCC-GGCGGCUGGGcaAGGGGU- -5'
1764 3' -63.5 NC_001347.2 + 90542 0.7 0.484307
Target:  5'- gCGGCCGGagacugCGCCGACagcucgaccauCCGUUCCaCCGa -3'
miRNA:   3'- gGCUGGCCg-----GCGGCUG-----------GGCAAGG-GGU- -5'
1764 3' -63.5 NC_001347.2 + 38022 0.7 0.484307
Target:  5'- cUCGGCggCGGgCGCCGACUCGcgUCCCAg -3'
miRNA:   3'- -GGCUG--GCCgGCGGCUGGGCaaGGGGU- -5'
1764 3' -63.5 NC_001347.2 + 63216 0.7 0.484307
Target:  5'- aCC-ACCGGCCGCUGACgCUGUUUacgCCGg -3'
miRNA:   3'- -GGcUGGCCGGCGGCUG-GGCAAGg--GGU- -5'
1764 3' -63.5 NC_001347.2 + 103412 0.7 0.492987
Target:  5'- cCUGauGCCGGCCGCC-ACCgCGgUCUCCAc -3'
miRNA:   3'- -GGC--UGGCCGGCGGcUGG-GCaAGGGGU- -5'
1764 3' -63.5 NC_001347.2 + 7911 0.7 0.518547
Target:  5'- gCGACaaGGCCGCCuGAgCCGguagcuccuucuuUUCCCCAg -3'
miRNA:   3'- gGCUGg-CCGGCGG-CUgGGC-------------AAGGGGU- -5'
1764 3' -63.5 NC_001347.2 + 178757 0.69 0.53738
Target:  5'- gCUGuCCGcGCCGCCGAgccugCCGUUgCCCGu -3'
miRNA:   3'- -GGCuGGC-CGGCGGCUg----GGCAAgGGGU- -5'
1764 3' -63.5 NC_001347.2 + 188154 0.69 0.53738
Target:  5'- uCUGgcACCGGCCGCCGaagcccacgcuGCCCGUUCggcggCCGu -3'
miRNA:   3'- -GGC--UGGCCGGCGGC-----------UGGGCAAGg----GGU- -5'
1764 3' -63.5 NC_001347.2 + 192256 0.69 0.540995
Target:  5'- gCCGGcCCGaGCgCGCCGGggagaagaaccucuuCCCGggCCCCGc -3'
miRNA:   3'- -GGCU-GGC-CG-GCGGCU---------------GGGCaaGGGGU- -5'
1764 3' -63.5 NC_001347.2 + 199616 0.69 0.546432
Target:  5'- gCC-ACC-GCCGCCGGCgCCGUUCUCgGg -3'
miRNA:   3'- -GGcUGGcCGGCGGCUG-GGCAAGGGgU- -5'
1764 3' -63.5 NC_001347.2 + 63113 0.69 0.554619
Target:  5'- gCCGcCgCGGCCGCCGcuguggccggaguGCCCGUcgccgcaaaCCCCGu -3'
miRNA:   3'- -GGCuG-GCCGGCGGC-------------UGGGCAa--------GGGGU- -5'
1764 3' -63.5 NC_001347.2 + 135542 0.69 0.562842
Target:  5'- -gGACCGauuGCCGUCGAgCCGgggcgucgcccgUCCCCAc -3'
miRNA:   3'- ggCUGGC---CGGCGGCUgGGCa-----------AGGGGU- -5'
1764 3' -63.5 NC_001347.2 + 88039 0.69 0.564674
Target:  5'- gCUGAgCGGCUGCggaaugCGGCCCGggCCCg- -3'
miRNA:   3'- -GGCUgGCCGGCG------GCUGGGCaaGGGgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.