miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1764 3' -63.5 NC_001347.2 + 136012 0.67 0.684241
Target:  5'- cCCGGCCgagguccggagcgGGCCGCgcccggugccCGGCCCacggCCCCGg -3'
miRNA:   3'- -GGCUGG-------------CCGGCG----------GCUGGGcaa-GGGGU- -5'
1764 3' -63.5 NC_001347.2 + 54281 0.67 0.666679
Target:  5'- aCCuGCUGggcGCCGCUGGCagCGUUCCCUAu -3'
miRNA:   3'- -GGcUGGC---CGGCGGCUGg-GCAAGGGGU- -5'
1764 3' -63.5 NC_001347.2 + 114795 0.67 0.666679
Target:  5'- uUCG-CCGGCaCGCUGuCCCGgcaCCCGc -3'
miRNA:   3'- -GGCuGGCCG-GCGGCuGGGCaagGGGU- -5'
1764 3' -63.5 NC_001347.2 + 71704 0.67 0.666679
Target:  5'- -gGACaucaucGCCGCCGACCCGcgugugCCCUg -3'
miRNA:   3'- ggCUGgc----CGGCGGCUGGGCaa----GGGGu -5'
1764 3' -63.5 NC_001347.2 + 200341 0.67 0.648104
Target:  5'- cCCGugguCUGGCCGCCGGgCUGgaaCCUAg -3'
miRNA:   3'- -GGCu---GGCCGGCGGCUgGGCaagGGGU- -5'
1764 3' -63.5 NC_001347.2 + 125230 0.67 0.648104
Target:  5'- gCCGACaCGGCgGCaa--CCGUUuCCCCGu -3'
miRNA:   3'- -GGCUG-GCCGgCGgcugGGCAA-GGGGU- -5'
1764 3' -63.5 NC_001347.2 + 184498 0.68 0.638798
Target:  5'- gCGGcCCGGCCGCCG-CgCCGUgugagagUUCCAg -3'
miRNA:   3'- gGCU-GGCCGGCGGCuG-GGCAa------GGGGU- -5'
1764 3' -63.5 NC_001347.2 + 145597 0.68 0.629487
Target:  5'- aCCGACCuuGGCUGCCaagUCCGUaUCCCUc -3'
miRNA:   3'- -GGCUGG--CCGGCGGcu-GGGCA-AGGGGu -5'
1764 3' -63.5 NC_001347.2 + 128341 0.68 0.629487
Target:  5'- gCGugUGGCCGCCGcuGCUCGagcaCCUCAc -3'
miRNA:   3'- gGCugGCCGGCGGC--UGGGCaa--GGGGU- -5'
1764 3' -63.5 NC_001347.2 + 44354 0.68 0.610877
Target:  5'- gCCGACCGaCCaGCCGGCCgaUUCgCCCGc -3'
miRNA:   3'- -GGCUGGCcGG-CGGCUGGgcAAG-GGGU- -5'
1764 3' -63.5 NC_001347.2 + 86199 0.68 0.601588
Target:  5'- gUCGuCCGaGCCGCCGugCCGgUCgUCGc -3'
miRNA:   3'- -GGCuGGC-CGGCGGCugGGCaAGgGGU- -5'
1764 3' -63.5 NC_001347.2 + 197615 0.68 0.601588
Target:  5'- -aGugCGcGCCGCCGACUCGcugCCgCAg -3'
miRNA:   3'- ggCugGC-CGGCGGCUGGGCaa-GGgGU- -5'
1764 3' -63.5 NC_001347.2 + 126733 0.68 0.601588
Target:  5'- aCCGGguuuuCUGGCCGCCGGCU--UUCCaCCGa -3'
miRNA:   3'- -GGCU-----GGCCGGCGGCUGGgcAAGG-GGU- -5'
1764 3' -63.5 NC_001347.2 + 88039 0.69 0.564674
Target:  5'- gCUGAgCGGCUGCggaaugCGGCCCGggCCCg- -3'
miRNA:   3'- -GGCUgGCCGGCG------GCUGGGCaaGGGgu -5'
1764 3' -63.5 NC_001347.2 + 135542 0.69 0.562842
Target:  5'- -gGACCGauuGCCGUCGAgCCGgggcgucgcccgUCCCCAc -3'
miRNA:   3'- ggCUGGC---CGGCGGCUgGGCa-----------AGGGGU- -5'
1764 3' -63.5 NC_001347.2 + 63113 0.69 0.554619
Target:  5'- gCCGcCgCGGCCGCCGcuguggccggaguGCCCGUcgccgcaaaCCCCGu -3'
miRNA:   3'- -GGCuG-GCCGGCGGC-------------UGGGCAa--------GGGGU- -5'
1764 3' -63.5 NC_001347.2 + 199616 0.69 0.546432
Target:  5'- gCC-ACC-GCCGCCGGCgCCGUUCUCgGg -3'
miRNA:   3'- -GGcUGGcCGGCGGCUG-GGCAAGGGgU- -5'
1764 3' -63.5 NC_001347.2 + 192256 0.69 0.540995
Target:  5'- gCCGGcCCGaGCgCGCCGGggagaagaaccucuuCCCGggCCCCGc -3'
miRNA:   3'- -GGCU-GGC-CG-GCGGCU---------------GGGCaaGGGGU- -5'
1764 3' -63.5 NC_001347.2 + 188154 0.69 0.53738
Target:  5'- uCUGgcACCGGCCGCCGaagcccacgcuGCCCGUUCggcggCCGu -3'
miRNA:   3'- -GGC--UGGCCGGCGGC-----------UGGGCAAGg----GGU- -5'
1764 3' -63.5 NC_001347.2 + 178757 0.69 0.53738
Target:  5'- gCUGuCCGcGCCGCCGAgccugCCGUUgCCCGu -3'
miRNA:   3'- -GGCuGGC-CGGCGGCUg----GGCAAgGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.