miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1764 3' -63.5 NC_001347.2 + 6863 0.67 0.685162
Target:  5'- gCGugCaGCCGCCGAgCCCGUcgacgUUgCCGa -3'
miRNA:   3'- gGCugGcCGGCGGCU-GGGCA-----AGgGGU- -5'
1764 3' -63.5 NC_001347.2 + 7911 0.7 0.518547
Target:  5'- gCGACaaGGCCGCCuGAgCCGguagcuccuucuuUUCCCCAg -3'
miRNA:   3'- gGCUGg-CCGGCGG-CUgGGC-------------AAGGGGU- -5'
1764 3' -63.5 NC_001347.2 + 13530 0.75 0.249684
Target:  5'- gCGGCCcgGGCCGCCGugCUGgagggccgCCCCAc -3'
miRNA:   3'- gGCUGG--CCGGCGGCugGGCaa------GGGGU- -5'
1764 3' -63.5 NC_001347.2 + 28251 0.71 0.467171
Target:  5'- aCUGGCUGGaacgucggCGCCGACCCGggaCCCUg -3'
miRNA:   3'- -GGCUGGCCg-------GCGGCUGGGCaa-GGGGu -5'
1764 3' -63.5 NC_001347.2 + 30608 0.74 0.299046
Target:  5'- gCGGCCGGCCGCgGugCCGgcggcuaugauccugUggUCCCCGu -3'
miRNA:   3'- gGCUGGCCGGCGgCugGGC---------------A--AGGGGU- -5'
1764 3' -63.5 NC_001347.2 + 37059 0.65 0.756223
Target:  5'- gCCGcggagguGCUGGCgGCCGugGCCUGUggCCCGa -3'
miRNA:   3'- -GGC-------UGGCCGgCGGC--UGGGCAagGGGU- -5'
1764 3' -63.5 NC_001347.2 + 38022 0.7 0.484307
Target:  5'- cUCGGCggCGGgCGCCGACUCGcgUCCCAg -3'
miRNA:   3'- -GGCUG--GCCgGCGGCUGGGCaaGGGGU- -5'
1764 3' -63.5 NC_001347.2 + 38410 0.66 0.712596
Target:  5'- uCCGuGCCGcucGCCGCUGGCggcgaCGUcgUCCCCGc -3'
miRNA:   3'- -GGC-UGGC---CGGCGGCUGg----GCA--AGGGGU- -5'
1764 3' -63.5 NC_001347.2 + 43979 1.09 0.001276
Target:  5'- gCCGACCGGCCGCCGACCCGUUCCCCAg -3'
miRNA:   3'- -GGCUGGCCGGCGGCUGGGCAAGGGGU- -5'
1764 3' -63.5 NC_001347.2 + 44354 0.68 0.610877
Target:  5'- gCCGACCGaCCaGCCGGCCgaUUCgCCCGc -3'
miRNA:   3'- -GGCUGGCcGG-CGGCUGGgcAAG-GGGU- -5'
1764 3' -63.5 NC_001347.2 + 54281 0.67 0.666679
Target:  5'- aCCuGCUGggcGCCGCUGGCagCGUUCCCUAu -3'
miRNA:   3'- -GGcUGGC---CGGCGGCUGg-GCAAGGGGU- -5'
1764 3' -63.5 NC_001347.2 + 62761 0.67 0.685162
Target:  5'- aCGAgCGGCgGCCGACCCcg-CCg-- -3'
miRNA:   3'- gGCUgGCCGgCGGCUGGGcaaGGggu -5'
1764 3' -63.5 NC_001347.2 + 63113 0.69 0.554619
Target:  5'- gCCGcCgCGGCCGCCGcuguggccggaguGCCCGUcgccgcaaaCCCCGu -3'
miRNA:   3'- -GGCuG-GCCGGCGGC-------------UGGGCAa--------GGGGU- -5'
1764 3' -63.5 NC_001347.2 + 63216 0.7 0.484307
Target:  5'- aCC-ACCGGCCGCUGACgCUGUUUacgCCGg -3'
miRNA:   3'- -GGcUGGCCGGCGGCUG-GGCAAGg--GGU- -5'
1764 3' -63.5 NC_001347.2 + 65891 0.71 0.44207
Target:  5'- gCCGACC-GCCGCCG-CCC--UCCCuCAa -3'
miRNA:   3'- -GGCUGGcCGGCGGCuGGGcaAGGG-GU- -5'
1764 3' -63.5 NC_001347.2 + 71664 0.66 0.703499
Target:  5'- gCGGCCGGCgGCCu-CuuGUuuucguugUCCCCu -3'
miRNA:   3'- gGCUGGCCGgCGGcuGggCA--------AGGGGu -5'
1764 3' -63.5 NC_001347.2 + 71704 0.67 0.666679
Target:  5'- -gGACaucaucGCCGCCGACCCGcgugugCCCUg -3'
miRNA:   3'- ggCUGgc----CGGCGGCUGGGCaa----GGGGu -5'
1764 3' -63.5 NC_001347.2 + 79632 0.66 0.703499
Target:  5'- uUCGGCCGGCUGCUGcACCacagCgCCAg -3'
miRNA:   3'- -GGCUGGCCGGCGGC-UGGgcaaGgGGU- -5'
1764 3' -63.5 NC_001347.2 + 80673 0.65 0.756223
Target:  5'- cCCGuaacagcGCCGGCaGCCGGCCCaGgacaugaCCCAc -3'
miRNA:   3'- -GGC-------UGGCCGgCGGCUGGG-Caag----GGGU- -5'
1764 3' -63.5 NC_001347.2 + 85979 0.66 0.712596
Target:  5'- -aGugCGaGCCGCCGccACCCGaaccgUCCgCCGc -3'
miRNA:   3'- ggCugGC-CGGCGGC--UGGGCa----AGG-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.