miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1764 5' -54.5 NC_001347.2 + 188227 0.66 0.983347
Target:  5'- cGCGAGcGGcagaaACGGGUgGACGacgaGGUGGUGc -3'
miRNA:   3'- aUGCUC-CU-----UGCCUA-UUGCg---CCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 50994 0.66 0.983347
Target:  5'- uUACGAGGuaaucaacguAACaGGAU-ACGuUGGUGGCa -3'
miRNA:   3'- -AUGCUCC----------UUG-CCUAuUGC-GCCACCGc -5'
1764 5' -54.5 NC_001347.2 + 5571 0.66 0.982203
Target:  5'- cGCGguGGGGGCGugccccgcagaccccGGuUAAUGCGGUGGUGg -3'
miRNA:   3'- aUGC--UCCUUGC---------------CU-AUUGCGCCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 228747 0.66 0.981407
Target:  5'- cGCGGGGGACgGGGUAGC-CGaGUGcuGCGc -3'
miRNA:   3'- aUGCUCCUUG-CCUAUUGcGC-CAC--CGC- -5'
1764 5' -54.5 NC_001347.2 + 140538 0.66 0.981407
Target:  5'- gACGGGGGuuuggACGGcaaagGUGACGaCGGgguuccgGGCGg -3'
miRNA:   3'- aUGCUCCU-----UGCC-----UAUUGC-GCCa------CCGC- -5'
1764 5' -54.5 NC_001347.2 + 155894 0.66 0.977026
Target:  5'- gACGAGucggcgcCGGGUAAauaaaucgGCGGUGGCGu -3'
miRNA:   3'- aUGCUCcuu----GCCUAUUg-------CGCCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 229668 0.66 0.97457
Target:  5'- gGCGGGuGugccGGCGGGg--UGUGGUGGCGg -3'
miRNA:   3'- aUGCUC-C----UUGCCUauuGCGCCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 189 0.66 0.97457
Target:  5'- gGCGGGuGugccGGCGGGg--UGUGGUGGCGg -3'
miRNA:   3'- aUGCUC-C----UUGCCUauuGCGCCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 68204 0.66 0.971654
Target:  5'- aGCGAGGAcacgcagACGGcgGAaGCGGUagacgcGGCGc -3'
miRNA:   3'- aUGCUCCU-------UGCCuaUUgCGCCA------CCGC- -5'
1764 5' -54.5 NC_001347.2 + 60661 0.67 0.969096
Target:  5'- gUGCGGGGGugACGcuguuaGUGGUGGCGg -3'
miRNA:   3'- -AUGCUCCU--UGCcuauugCGCCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 136121 0.67 0.966064
Target:  5'- gGgGAGGGugGGGggUAGgGCGGgaggcaGGCGg -3'
miRNA:   3'- aUgCUCCUugCCU--AUUgCGCCa-----CCGC- -5'
1764 5' -54.5 NC_001347.2 + 140625 0.67 0.962829
Target:  5'- aGCGAcGGucUGGGUGGCggucGUGGUGGUGg -3'
miRNA:   3'- aUGCU-CCuuGCCUAUUG----CGCCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 173703 0.67 0.962829
Target:  5'- gGCGGuGGuuccgguacGCGGAaaaugAGCaGCGGUGGCGg -3'
miRNA:   3'- aUGCU-CCu--------UGCCUa----UUG-CGCCACCGC- -5'
1764 5' -54.5 NC_001347.2 + 99180 0.67 0.962494
Target:  5'- gACGA-GAGCGcagccuucauauuGAUAACGCGGuUGGUGu -3'
miRNA:   3'- aUGCUcCUUGC-------------CUAUUGCGCC-ACCGC- -5'
1764 5' -54.5 NC_001347.2 + 182404 0.67 0.959386
Target:  5'- gUACGuGGAcGCGG---GCGUGGUGGUu -3'
miRNA:   3'- -AUGCuCCU-UGCCuauUGCGCCACCGc -5'
1764 5' -54.5 NC_001347.2 + 142561 0.67 0.955729
Target:  5'- gACGAGGcuggcggcgucGGCGGG-AGCaGCGGgGGCGg -3'
miRNA:   3'- aUGCUCC-----------UUGCCUaUUG-CGCCaCCGC- -5'
1764 5' -54.5 NC_001347.2 + 57297 0.68 0.951854
Target:  5'- -cUGAGGAuaaGCGGGaGAUGUGGaUGGCu -3'
miRNA:   3'- auGCUCCU---UGCCUaUUGCGCC-ACCGc -5'
1764 5' -54.5 NC_001347.2 + 225902 0.68 0.943439
Target:  5'- -cUGGGGAACGGGUcGGCGgcCGGUcGGCu -3'
miRNA:   3'- auGCUCCUUGCCUA-UUGC--GCCA-CCGc -5'
1764 5' -54.5 NC_001347.2 + 228068 0.68 0.943439
Target:  5'- gGCGAGGGGauggguuuauUGGAUAucggugaagcaGCGUGGcGGCGa -3'
miRNA:   3'- aUGCUCCUU----------GCCUAU-----------UGCGCCaCCGC- -5'
1764 5' -54.5 NC_001347.2 + 151295 0.68 0.942995
Target:  5'- cUACGGGGAcACGGAcAGCGUGuuuguccgcuuucGUGGCc -3'
miRNA:   3'- -AUGCUCCU-UGCCUaUUGCGC-------------CACCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.